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Bioinformatics Advance Access originally published online on February 26, 2004
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Bioinformatics 20(11) © Oxford University Press 2004; all rights reserved.

Applications Note

HMMGEP: clustering gene expression data using hidden Markov models

Xinglai Ji 1,{dagger}, Yuan Yuan 1,{dagger}, Jesse Li-Ling 2, Yanda Li 1 and Zhirong Sun 1,*

1 Institute of Bioinformatics, Tsinghua University, Beijing 100084, Peoples Republic of China and 2 Department of Medical Genetics, China Medical University, Shenyang 110001, Peoples Republic of China

Received on September 15, 2003; revised on December 21, 2003; accepted on January 8, 2004
Advance Access Publication February 26, 2004

Summary: The package HMMGEP performs cluster analysis on gene expression data using hidden Markov models.

Availability: HMMGEP, including the source code, documentation and sample data files, is available at http://www.bioinfo.tsinghua.edu.cn:8080/~rich/hmmgep_download/index.html.

Contact: rich{at}bioinfo.tsinghua.edu.cn; sunzhr{at}mail.tsinghua.edu.cn

* To whom correspondence should be addressed.

{dagger} The authors wish it to be known that, in their opinion, the first two authors should be regarded as joint First Authors.


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