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Bioinformatics Advance Access originally published online on February 26, 2004
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Bioinformatics 20(11) © Oxford University Press 2004; all rights reserved.

Applications Note

FunMap: functional mapping of complex traits

Chang-Xing Ma , Rongling Wu * and George Casella

Department of Statistics, 533 McCarty Hall C, University of Florida, Gainesville, FL 32611, USA

Received on October 6, 2003; revised on January 19, 2004; accepted on January 28, 2004
Advance Access Publication February 26, 2004

Summary: FunMap is a Web-based user interface designed to map quantitative trait loci (QTL) affecting function-valued traits or infinite-dimensional traits in well-structured pedigrees or natural populations. User input includes three files: longitudinal trait data, marker genotypes and/or a linkage map. This software allows for a systematic genome-wide scan and significance test of QTL throughout the map. The dynamic change of QTL effects during the time course of growth is automatically drawn, from which specific biological hypotheses regarding the genetic control mechanisms of growth and development can be tested.

Availability: http://web.biostat.ufl.edu/~cma/genetics/software.html

Contact: cma{at}biostat.ufl.edu

* To whom correspondence should be addressed.


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