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Bioinformatics Advance Access originally published online on February 26, 2004
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Bioinformatics 20(12) © Oxford University Press 2004; all rights reserved.

Applications Note

‘Harvester’: a fast meta search engine of human protein resources

Urban Liebel 1, Bjoern Kindler 2 and Rainer Pepperkok 1,*

1 Cell Biology and Cell Biophysics Programme and 2 Computer and Network Group European Molecular Biology Laboratory (EMBL), Meyerhofstrasse 1, 69117 Heidelberg, Germany

Received on September 17, 2003; revised on December 9, 2003; accepted on January 5, 2004
Advance Access Publication February 26, 2004

Summary: We have developed a Web-based tool named ‘Harvester’ that bulk-collects bioinformatic data on human proteins from various databases and prediction servers. The information on every single protein is assembled on a single HTML page as a combination of database screen-shots and plain text. A full text meta search engine, similar to GoogleTM, allows screening of the whole genome proteome for current protein functions and predictions in a few seconds. With Harvester it is now possible to compare and check the quality of different database entries and prediction algorithms on a single page. A feedback forum allows users to comment on Harvester and to report database inconsistencies.

Availability: The service is freely available to the academic community at http://harvester.embl.de.

Contact: pepperko{at}embl.de

* To whom correspondence should be addressed.


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