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Bioinformatics Advance Access originally published online on February 26, 2004
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Bioinformatics 20(12) © Oxford University Press 2004; all rights reserved.

Applications Note

GenAlyzer: interactive visualization of sequence similarities between entire genomes

Jomuna V. Choudhuri 1,{dagger}, Chris Schleiermacher 2,{dagger}, Stefan Kurtz 3,* and Robert Giegerich 1

1 Faculty of Technology, University of Bielefeld, P.O. Box 100131, 33501 Bielefeld, Germany, 2 Artemis Pharmaceuticals, Neurather Ring 1, 51063 Köln, Germany and 3 Center for Bioinformatics, University of Hamburg, Bundesstrasse 43, 20146 Hamburg, Germany

Received on December 4, 2003; revised on January 27, 2004Advance Access Publication February 26, 2004

Summary: Genalyzer is a software tool designed for the interactive visualization of sequence matches between DNA or protein sequences. It provides visualizations on different levels of granularity, from complete overviews via zoomed regions to alignments of particular matching substrings. Genalyzer can efficiently handle very large datasets, allowing to display tens of thousands of matches between sequences of tens of millions of bases.

Availability: Genalyzer is available free of charge for non-commercial research institutions. For more details, see http://www.genalyzer.de

Contact: kurtz{at}zbh.uni-hamburg.de

* To whom correspondence should be addressed.

{dagger} The authors wish it to be known that, in their opinion, the first two authors should be regarded as joint First Authors.


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