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Bioinformatics Advance Access originally published online on April 15, 2004
Bioinformatics 2004 20(15):2476-2478; doi:10.1093/bioinformatics/bth260
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Bioinformatics 20(15) © Oxford University Press 2004; all rights reserved.

Applications Note

The SRS 3D module: integrating structures, sequences and features

Seán I. O'Donoghue *,{dagger}, Joachim E. W. Meyer , Andrea Schafferhans and Karsten Fries

LION bioscience AG, Waldhofer Strasse 98, 69123 Heidelberg, Germany

Received on January 28, 2003; revised on February 25, 2004; accepted on February 27, 2004
Advance Access Publication April 15, 2004

Summary: In this paper we present SRS 3D, a new service that allows users to easily and rapidly find all related structures for a given target sequence; structures can then be viewed together with sequences, alignments and sequence features (currently from UniProt, InterPro and PDB). Extensive user feedback confirms that SRS 3D is intuitive and useful especially for those not expert in structures.

Availability: An SRS 3D server is provided at http://srs3d.ebi.ac.uk/

Supplementary information: Complete documentation is available (click the ‘Help’ button after login). Product information can be found at http://www.lionbioscience.com/SRS3D/products/srs/srs-3d

Contact: contact{at}lionbioscience.com

* To whom correspondence should be addressed.

{dagger} Present address: Cay Labs, Untere Neckarstrasse 56, 69117 Heidelberg, Germany.


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[Abstract] [Full Text] [PDF]


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