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Bioinformatics Advance Access originally published online on April 22, 2004
Bioinformatics 2004 20(16):2839-2840; doi:10.1093/bioinformatics/bth277
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Bioinformatics vol. 20 issue 16 © Oxford University Press 2004; all rights reserved.

Applications Note

GDPC: connecting researchers with multiple integrated data sources

Terry M. Casstevens 1,* and Edward S. Buckler 1,2

1 Institute for Genomic Diversity, Cornell University, Ithaca, NY 14853-2703, USA, 2 USDA-ARS, Ithaca, NY 14853-2703, USA

Received on October 27, 2003; accepted on April 8, 2004
Advance Access Publication April 24, 2004

Summary: The goal of this project is to simplify access to genomic diversity and phenotype data, thereby encouraging reuse of this data. The Genomic Diversity and Phenotype Connection (GDPC) accomplishes this by retrieving data from one or more data sources and by allowing researchers to analyze integrated data in a standard format. GDPC is written in JAVA and provides (1) data sources available as web services that transfer XML formatted data via the SOAP protocol; (2) a JAVA API for programmatic access to data sources; and (3) a front-end application that allows users to manage data sources, retrieve data based on filters, sort/group data based on property values and save/open the data as XML files.

Availability: The source code, compiled code, documentation and GDPC Browser are freely available at: www.maizegenetics.net/gdpc/index.html. The current release of GDPC is version 1.0, with updated releases planned for the future. Comments are welcome.

Contact: terry_casstevens{at}hotmail.com; esb33{at}cornell.edu

* To whom correspondence should be addressed.


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