Skip Navigation


Bioinformatics Advance Access originally published online on April 29, 2004
Bioinformatics 2004 20(16):2848-2850; doi:10.1093/bioinformatics/bth287
This Article
Right arrow FREE Full Text (Print PDF) Freely available
Right arrow FREE Full Text (Screen PDF)
Right arrow All Versions of this Article:
20/16/2848    most recent
bth287v1
Right arrow Comments: Submit a response
Right arrow Alert me when this article is cited
Right arrow Alert me when Comments are posted
Right arrow Alert me if a correction is posted
Services
Right arrow Email this article to a friend
Right arrow Similar articles in this journal
Right arrow Similar articles in ISI Web of Science
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Add to My Personal Archive
Right arrow Download to citation manager
Right arrow Search for citing articles in:
ISI Web of Science (6)
Right arrowRequest Permissions
Google Scholar
Right arrow Articles by Lazzarato, F.
Right arrow Articles by Calogero, R. A.
Right arrow Search for Related Content
PubMed
Right arrow PubMed Citation
Right arrow Articles by Lazzarato, F.
Right arrow Articles by Calogero, R. A.
Social Bookmarking
Add to CiteULike   Add to Connotea   Add to Del.icio.us  
What's this?

Bioinformatics vol. 20 issue 16 © Oxford University Press 2004; all rights reserved.

Applications Note

RRE: a tool for the extraction of non-coding regions surrounding annotated genes from genomic datasets

F. Lazzarato 1, G. Franceschinis 1, M. Botta 2, F. Cordero 3 and R. A. Calogero 3,*

1 Department of Informatics, University of Piemonte Orientale ‘Amedeo Avogadro’, Spalto Marengo 33, Alessandria, Italy, 2 Department of Informatics University of Torino, Corso Svizzera 185-10149, Torino, Italy and 3 Department of Clinical and Biological Sciences University of Torino, Regione Gonzole 10, 10043 Orbassano (TO), Italy

Received on November 3, 2003; revised on March 3, 2004; accepted on April 17, 2004
Advance Access Publication April 29, 2004

Summary: RRE allows the extraction of non-coding regions surrounding a coding sequence [i.e. gene upstream region, 5'-untranslated region (5'-UTR), introns, 3'-UTR, downstream region] from annotated genomic datasets available at NCBI.

Availability: RRE parser and web-based interface are accessible at http://www.bioinformatica.unito.it/bioinformatics/rre/rre.html

Contact: raffaele.calogero{at}unito.it

* To whom correspondence should be addressed.


Add to CiteULike CiteULike   Add to Connotea Connotea   Add to Del.icio.us Del.icio.us    What's this?


This article has been cited by other articles:


Home page
 FASEB J.Home page
F. Orso, E. Penna, D. Cimino, E. Astanina, F. Maione, D. Valdembri, E. Giraudo, G. Serini, P. Sismondi, M. De Bortoli, et al.
AP-2{alpha} and AP-2{gamma} regulate tumor progression via specific genetic programs
FASEB J, August 1, 2008; 22(8): 2702 - 2714.
[Abstract] [Full Text] [PDF]


Disclaimer: Please note that abstracts for content published before 1996 were created through digital scanning and may therefore not exactly replicate the text of the original print issues. All efforts have been made to ensure accuracy, but the Publisher will not be held responsible for any remaining inaccuracies. If you require any further clarification, please contact our Customer Services Department.