Skip Navigation


Bioinformatics Advance Access originally published online on June 16, 2004
Bioinformatics 2004 20(17):3270-3272; doi:10.1093/bioinformatics/bth363
This Article
Right arrow FREE Full Text (Print PDF) Freely available
Right arrow FREE Full Text (Screen PDF)
Right arrow All Versions of this Article:
20/17/3270    most recent
bth363v1
Right arrow Comments: Submit a response
Right arrow Alert me when this article is cited
Right arrow Alert me when Comments are posted
Right arrow Alert me if a correction is posted
Services
Right arrow Email this article to a friend
Right arrow Similar articles in this journal
Right arrow Similar articles in ISI Web of Science
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Add to My Personal Archive
Right arrow Download to citation manager
Right arrow Search for citing articles in:
ISI Web of Science (6)
Right arrowRequest Permissions
Google Scholar
Right arrow Articles by Hou, B. K.
Right arrow Articles by Lee, S. Y.
Right arrow Search for Related Content
PubMed
Right arrow PubMed Citation
Right arrow Articles by Hou, B. K.
Right arrow Articles by Lee, S. Y.
Social Bookmarking
Add to CiteULike   Add to Connotea   Add to Del.icio.us  
What's this?

Bioinformatics vol. 20 issue 17 © Oxford University Press 2004; all rights reserved.

Applications Note

BioSilico: an integrated metabolic database system

Bo Kyeng Hou 1,{dagger}, Jin Sik Kim 2,{dagger}, Ji Hoon Jun 3, Dong-Yup Lee 1, Yong Wook Kim 3, Sujin Chae 4, Mira Roh 3, Yong-Ho In 3 and Sang Yup Lee 1,2,*

1 Department of BioSystems and Bioinformatics Research Center and 2 Metabolic and Biomolecular Engineering National Research Laboratory, Department of Chemical and Biomolecular Engineering, BioProcess Engineering Research Center, Korea Advanced Institute of Science and Technology, 373-1 Guseong-dong, Yuseong-gu, Daejeon 305-701, Republic of Korea, 3 IDRTech Inc., C-2711, Kolontripolis 1 210, Kumgok-dong, Bundang-gu, Sungnam 463-805, Republic of Korea and 4 Department of Biological Chemistry, College of Pharmacy, Seoul National University, San 56-1 Sillim-dong, Gwanak-gu, Seoul 151-742, Republic of Korea

Received on March 12, 2004; revised on April 14, 2004; accepted on June 10, 2004
Advance Access Publication June 17, 2004

Summary: BioSilico is a web-based database system that facilitates the search and analysis of metabolic pathways. Heterogeneous metabolic databases including LIGAND, ENZYME, EcoCyc and MetaCyc are integrated in a systematic way, thereby allowing users to efficiently retrieve the relevant information on enzymes, biochemical compounds and reactions. In addition, it provides well-designed view pages for more detailed summary information. BioSilico is developed as an extensible system with a robust systematic architecture.

Availability: BioSilico database system is accessible at http://biosilico.kaist.ac.kr

Contact: leesy{at}kaist.ac.kr

* To whom correspondence should be addressed.

{dagger} The authors wish it to be known that, in their opinion, the first two authors should be regarded as joint First Authors.


Add to CiteULike CiteULike   Add to Connotea Connotea   Add to Del.icio.us Del.icio.us    What's this?


This article has been cited by other articles:


Home page
 Proc. Natl. Acad. Sci. USAHome page
P.-J. Kim, D.-Y. Lee, T. Y. Kim, K. H. Lee, H. Jeong, S. Y. Lee, and S. Park
Metabolite essentiality elucidates robustness of Escherichia coli metabolism
PNAS, August 21, 2007; 104(34): 13638 - 13642.
[Abstract] [Full Text] [PDF]

Home page
 Appl. Environ. Microbiol.Home page
S. J. Lee, H. Song, and S. Y. Lee
Genome-Based Metabolic Engineering of Mannheimia succiniciproducens for Succinic Acid Production.
Appl. Envir. Microbiol., March 1, 2006; 72(3): 1939 - 1948.
[Abstract] [Full Text] [PDF]

Home page
 Appl. Environ. Microbiol.Home page
S. J. Lee, D.-Y. Lee, T. Y. Kim, B. H. Kim, J. Lee, and S. Y. Lee
Metabolic Engineering of Escherichia coli for Enhanced Production of Succinic Acid, Based on Genome Comparison and In Silico Gene Knockout Simulation
Appl. Envir. Microbiol., December 1, 2005; 71(12): 7880 - 7887.
[Abstract] [Full Text] [PDF]


Disclaimer: Please note that abstracts for content published before 1996 were created through digital scanning and may therefore not exactly replicate the text of the original print issues. All efforts have been made to ensure accuracy, but the Publisher will not be held responsible for any remaining inaccuracies. If you require any further clarification, please contact our Customer Services Department.