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Bioinformatics Advance Access originally published online on January 22, 2004
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Bioinformatics 20(3) © Oxford University Press 2004; all rights reserved.

Applications Note

VisCoSe: visualization and comparison of consensus sequences

Michael Spitzer 1,*, Georg Fuellen 1, Paul Cullen 2,3 and Stefan Lorkowski 2,4

1 Integrated Functional Genomics, IZKF, University Hospital Münster, Von-Esmarch-Str. 56, 48149 Münster, Germany, 2 Institute of Arteriosclerosis Research, Domagkstr. 3, 48149 Münster, Germany, 3 Ogham GmbH, Mendelstr. 11, 48149 Münster, Germany and 4 Institute of Biochemistry, Wilhelm-Klemm-Straße 2, 48149 Münster, Germany

Received on July 23, 2003 ; accepted on September 10, 2003
Advance Access Publication January 22, 2004

Summary: We introduce visualization and comparison of consensus sequences (VisCoSe) as a WWW service and a stand-alone command line Perl script for visualizing and comparing consensus sequences of protein and nucleotide sequences. VisCoSe is the only interface available that simultaneously calculates consensus sequences of multiple data sets and automatically compares these consensus sequences. Furthermore, VisCoSe allows visualization of chemical properties of amino acids.

Availability: http://viscose.ifg.uni-muenster.de/

Contact: michael.spitzer{at}uni-muenster.de

* To whom correspondence should be addressed.


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