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Bioinformatics Advance Access originally published online on January 22, 2004
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Bioinformatics 20(5) © Oxford University Press 2004; all rights reserved.

Enhancing scatterplots with smoothed densities

Paul H. C. Eilers * and Jelle J. Goeman

Department of Medical Statistics, Leiden University Medical Centre, The Netherlands

Received on August 11, 2003 ; accepted on October 3, 2003
Advance Access Publication January 22, 2004

Motivation: Scatterplots of microarray data generally contain a very large number of dots, making it difficult to get a good impression of their distribution in dense areas.

Results: We present a fast and simple algorithm for two-dimensional histogram smoothing, to visually enhance scatterplots.

Availability: Functions for Matlab and R are available from the corresponding author.

Contact: p.eilers{at}lumc.nl

* To whom correspondence should be addressed.


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