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Bioinformatics Advance Access originally published online on February 5, 2004
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Bioinformatics 20(7) © Oxford University Press 2004; all rights reserved.

Applications Note

ChromoViz: multimodal visualization of gene expression data onto chromosomes using scalable vector graphics

Jihoon Kim 1, Hee-Joon Chung 1, Chan Hee Park 1, Woong-Yang Park 2 and Ju Han Kim 1,3,*

1 Seoul National University Biomedical Informatics (SNUBI), 2 Department of Biochemistry and Molecular Biology and, 3 Human Genome Research Institute, Seoul National University College of Medicine, Seoul 110-799, Republic of Korea

Received on September 9, 2003; accepted on November 24, 2003
Advance Access Publication February 5, 2004

Summary: ChromoViz is an R package for the visualization of microarray gene expression data, cross-species and cross-platform comparisons, as well as non-expression genomic data obtained from public databases onto chromosomes. Chromosomal visualization format is proposed for the clear decoupling of the data layer from the procedure layer and the combined visualization of genomic data from heterogeneous data sources. Visualization with Javascript-enabled scalable vector graphics enables interactive visualization and navigation of data objects on the Web.

Availability: http://www.snubi.org/software/ChromoViz/

Contact: juhan{at}snu.ac.kr

* To whom correspondence should be addressed.


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