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Bioinformatics Advance Access originally published online on February 10, 2004
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Bioinformatics 20(8) © Oxford University Press 2004; all rights reserved.

Applications Note

Cellware—a multi-algorithmic software for computational systems biology

Pawan Dhar *, Tan Chee Meng , Sandeep Somani , Li Ye , Anand Sairam , Mandar Chitre , Zhu Hao and Kishore Sakharkar

Systems Biology Group, Bioinformatics Institute, 30 Biopolis Street, No. #07-01 Matrix Building, Singapore 138671

Received on August 11, 2003; revised on November 17, 2003; accepted on November 24, 2003
Advance Access Publication February 10, 2004

Summary: The intracellular environment of a cell hosts a wide variety of enzymatic reactions, diffusion events, molecular binding, polymerization and metabolic channeling. To transform these biological events into a computational framework, distinct modeling strategies are required. While currently no tool is capable of capturing all these events, progress is being made to create an integrated environment for the modeling community. To address this niche requirement, Cellware has been developed to offer a multi-algorithmic environment for modeling and simulating both deterministic and stochastic events in the cell.

Availability: The software is available for free and can be downloaded from http://www.bii.a-star.edu.sg/sbg/cellware

Contact: pk{at}bii.a-star.edu.sg

* To whom correspondence should be addressed.


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