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Bioinformatics Advance Access originally published online on February 12, 2004
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Bioinformatics 20(9) © Oxford University Press 2004; all rights reserved.

Applications Note

Site2genome: locating short DNA sequences in whole genomes

Martin C. Frith 1,{dagger}, Anason S. Halees 1,{dagger}, Ulla Hansen 1,2 and Zhiping Weng 1,3,*

1 Bioinformatics Program, 2 Biology Department and, 3 Biomedical Engineering Department, Boston University, 44 Cummington Street, Boston, MA 02215, USA

Received on April 15, 2003; revised on December 10, 2003; accepted on January 6, 2004
Advance Access Publication February 12, 2004

Summary: Many biological papers describe short, functional DNA sites without specifying their exact positions in the genome. We have developed a Web server that automates the tedious task of locating such sites in eukaryotic genomes, thus giving access to the context of rich annotations that are increasingly available for genome sequences.

Availability: http://zlab.bu.edu/site2genome/

Contact: zhiping{at}bu.edu

* To whom correspondence should be addressed.

{dagger} The authors wish it to be known that, in their opinion, the first two authors should be regarded as joint First Authors.


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