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Bioinformatics Advance Access originally published online on March 3, 2005
Bioinformatics 2005 21(10):2570-2571; doi:10.1093/bioinformatics/bti356
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© The Author 2005. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions{at}oupjournals.org

WebAllergen: a web server for predicting allergenic proteins

Tariq Riaz , Hen Ley Hor , Arun Krishnan , Francis Tang and Kuo-Bin Li *

Bioinformatics Institute 30 Biopolis Street, Singapore 138671

*To whom correspondence should be addressed.

Summary: WebAllergen is a web server that predicts the potential allergenicity of proteins. The query protein will be compared against a set of prebuilt allergenic motifs that have been obtained from 664 known allergen proteins. The query will also be compared with known allergens that do not have detectable allergenic motifs. Moreover, users are allowed to upload their own allergens as alternative training sequences on which a new set of allergenic motifs will be built. The query sequences can also be compared with these motifs.

Availability: http://weballergen.bii.a-star.edu.sg/

Contact: kuobin{at}bii.a-star.edu.sg


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