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Bioinformatics Advance Access originally published online on April 19, 2005
Bioinformatics 2005 21(12):2917-2920; doi:10.1093/bioinformatics/bti445
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© The Author 2005. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions{at}oupjournals.org

Meta-DP: domain prediction meta-server

Harpreet Kaur Saini 1,* and Daniel Fischer 1,2

1Center of Excellence in Bioinformatics and Department of Computer Science and Engineering, University at Buffalo 901 Washington Street, Suite 300, Buffalo, NY 14203, USA
2Department of Bioinformatics and Computer Science, Ben Gurion University Beer-Sheva 84015, Israel

*To whom correspondence should be addressed.

Summary: Meta-DP, a domain prediction meta-server provides a simple interface to predict domains in a given protein sequence using a number of domain prediction methods. The Meta-DP is a convenient resource because through accessing a single site, users automatically obtain the results of the various domain prediction methods along with a consensus prediction. The Meta-DP is currently coupled to 10 domain prediction servers and can be extended to include any number of methods. Meta-DP can thus become a centralized repository of available methods. Meta-DP was also used to evaluate the performance of 13 domain prediction methods in the context of CAFASP-DP.

Availability: The Meta-DP server is freely available at http://meta-dp.bioinformatics.buffalo.edu and the CAFASP-DP evaluation results are available at http://cafasp4.bioinformatics.buffalo.edu/dp/update.html

Contact: hkaur{at}bioinformatics.buffalo.edu

Supplementary information: Available at http://cafasp4.bioinformatics.buffalo.edu/dp/update.html


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