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Bioinformatics Advance Access originally published online on April 19, 2005
Bioinformatics 2005 21(13):3051-3052; doi:10.1093/bioinformatics/bti451
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© The Author 2005. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions{at}oupjournals.org

S-SPatt: simple statistics for patterns on Markov chains

Grégory Nuel

Laboratoire Statistique et Génome 523 place des terrasses de l'Agora, 91000 Evry, France

Summary: S-SPatt allows the counting of patterns occurrences in text files and, assuming these texts are generated from a random Markovian source, the computation of the P-value of a given observation using a simple binomial approximation.

Availability: S-SPatt is available at: http://stat.genopole.cnrs.fr/spatt

Contact: spatt{at}genopole.cnrs.fr


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