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Bioinformatics Advance Access originally published online on June 30, 2005
Bioinformatics 2005 21(17):3570-3571; doi:10.1093/bioinformatics/bti561
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© The Author 2005. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions{at}oupjournals.org

P-cats: prediction of catalytic residues in proteins from their tertiary structures

Kengo Kinoshita 1,2,* and Motonori Ota 3

1Institute of Medical Science, University of Tokyo Shirokanedai, Minato-ku, Tokyo 108-8639, Japan
2SORST, JST Honcho, Kawaguchi, Saitama 332-0012, Japan
3Global Scientific Information and Computing Center, Tokyo Institute of Technology O-okayama, Meguro-ku, Tokyo 152-8550, Japan

*To whom correspondence should be addressed.

Summary: P-cats is a web server that predicts the catalytic residues in proteins from the atomic coordinates. P-cats receives a coordinate file of the tertiary structure and sends out analytical results via e-mail. The reply contains a summary and two URLs to allow the user to examine the conserved residues: one for interactive images of the prediction results and the other for a graphical view of the multiple sequence alignment.

Availability: P-cats is freely available at http://p-cats.hgc.jp/p-cats

Contact: kino{at}ims.u-tokyo.ac.jp

Received on April 5, 2005; revised on June 20, 2005; accepted on June 27, 2005

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