Skip Navigation


Bioinformatics Advance Access originally published online on August 2, 2005
Bioinformatics 2005 21(18):3665-3666; doi:10.1093/bioinformatics/bti601
This Article
Right arrow Full Text Freely available
Right arrow FREE Full Text (Print PDF) Freely available
Right arrow All Versions of this Article:
21/18/3665    most recent
bti601v1
Right arrow Comments: Submit a response
Right arrow Alert me when this article is cited
Right arrow Alert me when Comments are posted
Right arrow Alert me if a correction is posted
Services
Right arrow Email this article to a friend
Right arrow Similar articles in this journal
Right arrow Similar articles in ISI Web of Science
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Add to My Personal Archive
Right arrow Download to citation manager
Right arrow Search for citing articles in:
ISI Web of Science (18)
Right arrowRequest Permissions
Google Scholar
Right arrow Articles by Abbott, J. C.
Right arrow Articles by Spratt, B. G.
Right arrow Search for Related Content
PubMed
Right arrow PubMed Citation
Right arrow Articles by Abbott, J. C.
Right arrow Articles by Spratt, B. G.
Social Bookmarking
Add to CiteULike   Add to Connotea   Add to Del.icio.us  
What's this?

© The Author 2005. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions{at}oupjournals.org

WebACT—an online companion for the Artemis Comparison Tool

J. C. Abbott 1,*, D. M. Aanensen 2, K. Rutherford 3,{dagger}, S. Butcher 1 and B. G. Spratt 2

1Centre for Bioinformatics, Division of Molecular Biosciences, Imperial College London London SW7 2AZ, UK
2Department of Infectious Disease Epidemiology, Imperial College London London, W2 1PG, UK
3Pathogen Sequencing Unit, Sanger Institute Cambridge CB10 1SA, UK

*To whom correspondence should be addressed.

Summary: WebACT is an online resource which enables the rapid provision of simultaneous BLAST comparisons between up to five genomic sequences in a format amenable for visualization with the well-known Artemis Comparison Tool (ACT). Comparisons can be generated on-the-fly using sequences directly retrieved via EMBL database queries, or by entering or uploading user sequences. Furthermore, pre-computed comparisons are available between all publicly available, completed prokaryotic genomes and plasmids currently contained within the Genome Reviews database (372 sequences, representing 175 different species). The system is designed to minimize the volume of downloaded data and maximize performance. Genome sequences, annotation and pre-computed comparisons are stored in a relational database allowing flexible querying based on user-defined sequence regions, from whole genome to a defined region flanking a specified gene. Comparison and sequence files, whether computed online or retrieved from the database of pre-computed genome comparisons, can be viewed online using ACT and are available for download.

Availability: Freely accessible at http://www.webact.org

Contact: admin{at}webact.org

Supplementary information: User guide and worked examples are available at http://www.webact.org/WebACT/docs

Received on May 23, 2005; revised on July 27, 2005; accepted on July 27, 2005

Add to CiteULike CiteULike   Add to Connotea Connotea   Add to Del.icio.us Del.icio.us    What's this?


This article has been cited by other articles:


Home page
 Antimicrob. Agents Chemother.Home page
N. Woodford, A. Carattoli, E. Karisik, A. Underwood, M. J. Ellington, and D. M. Livermore
Complete Nucleotide Sequences of Plasmids pEK204, pEK499, and pEK516, Encoding CTX-M Enzymes in Three Major Escherichia coli Lineages from the United Kingdom, All Belonging to the International O25:H4-ST131 Clone
Antimicrob. Agents Chemother., October 1, 2009; 53(10): 4472 - 4482.
[Abstract] [Full Text] [PDF]

Home page
 Gen Biol EvolHome page
H. Cai, R. Thompson, M. F. Budinich, J. R. Broadbent, and J. L. Steele
Genome Sequence and Comparative Genome Analysis of Lactobacillus casei: Insights into Their Niche-Associated Evolution
Gen Biol Evol, September 23, 2009; 2009(0): 239 - 257.
[Abstract] [Full Text] [PDF]

Home page
 Infect. Immun.Home page
C. Peigne, P. Bidet, F. Mahjoub-Messai, C. Plainvert, V. Barbe, C. Medigue, E. Frapy, X. Nassif, E. Denamur, E. Bingen, et al.
The Plasmid of Escherichia coli Strain S88 (O45:K1:H7) That Causes Neonatal Meningitis Is Closely Related to Avian Pathogenic E. coli Plasmids and Is Associated with High-Level Bacteremia in a Neonatal Rat Meningitis Model
Infect. Immun., June 1, 2009; 77(6): 2272 - 2284.
[Abstract] [Full Text] [PDF]

Home page
 Plant Physiol.Home page
J. D.F. Meyer, D. C.G. Silva, C. Yang, K. F. Pedley, C. Zhang, M. van de Mortel, J. H. Hill, R. C. Shoemaker, R. V. Abdelnoor, S. A. Whitham, et al.
Identification and Analyses of Candidate Genes for Rpp4-Mediated Resistance to Asian Soybean Rust in Soybean
Plant Physiology, May 1, 2009; 150(1): 295 - 307.
[Abstract] [Full Text] [PDF]

Home page
 Appl. Environ. Microbiol.Home page
J. A. Moynihan, J. P. Morrissey, E. R. Coppoolse, W. J. Stiekema, F. O'Gara, and E. F. Boyd
Evolutionary History of the phl Gene Cluster in the Plant-Associated Bacterium Pseudomonas fluorescens
Appl. Envir. Microbiol., April 1, 2009; 75(7): 2122 - 2131.
[Abstract] [Full Text] [PDF]

Home page
 J. Bacteriol.Home page
F. J. Cooke, D. J. Brown, M. Fookes, D. Pickard, A. Ivens, J. Wain, M. Roberts, R. A. Kingsley, N. R. Thomson, and G. Dougan
Characterization of the Genomes of a Diverse Collection of Salmonella enterica Serovar Typhimurium Definitive Phage Type 104
J. Bacteriol., December 15, 2008; 190(24): 8155 - 8162.
[Abstract] [Full Text] [PDF]

Home page
 J. Bacteriol.Home page
A. Mavroidi, D. M. Aanensen, D. Godoy, I. C. Skovsted, M. S. Kaltoft, P. R. Reeves, S. D. Bentley, and B. G. Spratt
Genetic Relatedness of the Streptococcus pneumoniae Capsular Biosynthetic Loci
J. Bacteriol., November 1, 2007; 189(21): 7841 - 7855.
[Abstract] [Full Text] [PDF]

Home page
 J. Bacteriol.Home page
D. M. Aanensen, A. Mavroidi, S. D. Bentley, P. R. Reeves, and B. G. Spratt
Predicted Functions and Linkage Specificities of the Products of the Streptococcus pneumoniae Capsular Biosynthetic Loci
J. Bacteriol., November 1, 2007; 189(21): 7856 - 7876.
[Abstract] [Full Text] [PDF]

Home page
 Appl. Environ. Microbiol.Home page
A. L. V. Cohen, J. D. Oliver, A. DePaola, E. J. Feil, and E. Fidelma Boyd
Emergence of a Virulent Clade of Vibrio vulnificus and Correlation with the Presence of a 33-Kilobase Genomic Island
Appl. Envir. Microbiol., September 1, 2007; 73(17): 5553 - 5565.
[Abstract] [Full Text] [PDF]

Home page
 J. Bacteriol.Home page
A. R. Parks and J. E. Peters
Transposon Tn7 Is Widespread in Diverse Bacteria and Forms Genomic Islands
J. Bacteriol., March 1, 2007; 189(5): 2170 - 2173.
[Abstract] [Full Text] [PDF]

Home page
 BioinformaticsHome page
A. M. Quirke, F. J. Reen, M. J. Claesson, and E. F. Boyd
Genomic island identification in Vibrio vulnificus reveals significant genome plasticity in this human pathogen
Bioinformatics, April 15, 2006; 22(8): 905 - 910.
[Abstract] [Full Text] [PDF]

Home page
 BioinformaticsHome page
L. Pritchard, J. A. White, P. R.J. Birch, and I. K. Toth
GenomeDiagram: a python package for the visualization of large-scale genomic data
Bioinformatics, March 1, 2006; 22(5): 616 - 617.
[Abstract] [Full Text] [PDF]


Disclaimer: Please note that abstracts for content published before 1996 were created through digital scanning and may therefore not exactly replicate the text of the original print issues. All efforts have been made to ensure accuracy, but the Publisher will not be held responsible for any remaining inaccuracies. If you require any further clarification, please contact our Customer Services Department.