Skip Navigation


Bioinformatics Advance Access originally published online on August 4, 2005
Bioinformatics 2005 21(18):3674-3676; doi:10.1093/bioinformatics/bti610
This Article
Right arrow Full Text Freely available
Right arrow FREE Full Text (Print PDF) Freely available
Right arrow All Versions of this Article:
21/18/3674    most recent
bti610v1
Right arrow Alert me when this article is cited
Right arrow Alert me if a correction is posted
Services
Right arrow Email this article to a friend
Right arrow Similar articles in this journal
Right arrow Similar articles in ISI Web of Science
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Add to My Personal Archive
Right arrow Download to citation manager
Right arrow Search for citing articles in:
ISI Web of Science (56)
Right arrowRequest Permissions
Google Scholar
Right arrow Articles by Conesa, A.
Right arrow Articles by Robles, M.
Right arrow Search for Related Content
PubMed
Right arrow PubMed Citation
Right arrow Articles by Conesa, A.
Right arrow Articles by Robles, M.
Social Bookmarking
Add to CiteULike   Add to Connotea   Add to Del.icio.us  
What's this?

© The Author 2005. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions{at}oupjournals.org

Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research

Ana Conesa 1,*,{dagger}, Stefan Götz 2,{dagger}, Juan Miguel García-Gómez 2, Javier Terol 1, Manuel Talón 1 and Montserrat Robles 2

1Centro de Genómica, Instituto Valenciano de Investigaciones Agrarias Moncada, Valencia, Spain
2BET-ITACA, Universidad Politécnica de Valencia Valencia, Spain

*To whom correspondence should be addressed.

Summary: We present here Blast2GO (B2G), a research tool designed with the main purpose of enabling Gene Ontology (GO) based data mining on sequence data for which no GO annotation is yet available. B2G joints in one application GO annotation based on similarity searches with statistical analysis and highlighted visualization on directed acyclic graphs. This tool offers a suitable platform for functional genomics research in non-model species. B2G is an intuitive and interactive desktop application that allows monitoring and comprehension of the whole annotation and analysis process.

Availability: Blast2GO is freely available via Java Web Start at http://www.blast2go.de

Supplementary material: http://www.blast2go.de -> Evaluation

Contact: aconesa{at}ivia.es; stefang{at}fis.upv.es

Received on June 27, 2005; revised on July 28, 2005; accepted on July 29, 2005

Add to CiteULike CiteULike   Add to Connotea Connotea   Add to Del.icio.us Del.icio.us    What's this?


This article has been cited by other articles:


Home page
 GlycobiologyHome page
N. Deshpande, M. R Wilkins, N. Packer, and H. Nevalainen
Protein glycosylation pathways in filamentous fungi
Glycobiology, August 1, 2008; 18(8): 626 - 637.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
F. Al-Shahrour, J. Carbonell, P. Minguez, S. Goetz, A. Conesa, J. Tarraga, I. Medina, E. Alloza, D. Montaner, and J. Dopazo
Babelomics: advanced functional profiling of transcriptomics, proteomics and genomics experiments
Nucleic Acids Res., July 1, 2008; 36(suppl_2): W341 - W346.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
S. Gotz, J. M. Garcia-Gomez, J. Terol, T. D. Williams, S. H. Nagaraj, M. J. Nueda, M. Robles, M. Talon, J. Dopazo, and A. Conesa
High-throughput functional annotation and data mining with the Blast2GO suite
Nucleic Acids Res., June 1, 2008; 36(10): 3420 - 3435.
[Abstract] [Full Text] [PDF]

Home page
 Proc. Natl. Acad. Sci. USAHome page
C. Martens, K. Vandepoele, and Y. Van de Peer
Whole-genome analysis reveals molecular innovations and evolutionary transitions in chromalveolate species
PNAS, March 4, 2008; 105(9): 3427 - 3432.
[Abstract] [Full Text] [PDF]

Home page
 Physiol. GenomicsHome page
S. A. M. Martin, J. B. Taggart, P. Seear, J. E. Bron, R. Talbot, A. J. Teale, G. E. Sweeney, B. Hoyheim, D. F. Houlihan, D. R. Tocher, et al.
Interferon type I and type II responses in an Atlantic salmon (Salmo salar) SHK-1 cell line by the salmon TRAITS/SGP microarray
Physiol Genomics, December 19, 2007; 32(1): 33 - 44.
[Abstract] [Full Text] [PDF]

Home page
 Plant CellHome page
J. K. Hane, R. G.T. Lowe, P. S. Solomon, K.-C. Tan, C. L. Schoch, J. W. Spatafora, P. W. Crous, C. Kodira, B. W. Birren, J. E. Galagan, et al.
Dothideomycete Plant Interactions Illuminated by Genome Sequencing and EST Analysis of the Wheat Pathogen Stagonospora nodorum
PLANT CELL, November 1, 2007; 19(11): 3347 - 3368.
[Abstract] [Full Text] [PDF]

Home page
 Mol. Cell. ProteomicsHome page
K. A. Duthie, L. C. Osborne, L. J. Foster, and N. Abraham
Proteomics Analysis of Interleukin (IL)-7-induced Signaling Effectors Shows Selective Changes in IL-7R{alpha}449F Knock-in T Cell Progenitors
Mol. Cell. Proteomics, October 1, 2007; 6(10): 1700 - 1710.
[Abstract] [Full Text] [PDF]

Home page
 Mol Biol EvolHome page
J. D. Hackett, H. S. Yoon, S. Li, A. Reyes-Prieto, S. E. Rummele, and D. Bhattacharya
Phylogenomic Analysis Supports the Monophyly of Cryptophytes and Haptophytes and the Association of Rhizaria with Chromalveolates
Mol. Biol. Evol., August 1, 2007; 24(8): 1702 - 1713.
[Abstract] [Full Text] [PDF]

Home page
 BioinformaticsHome page
M. J. Nueda, A. Conesa, J. A. Westerhuis, H. C. J. Hoefsloot, A. K. Smilde, M. Talon, and A. Ferrer
Discovering gene expression patterns in time course microarray experiments by ANOVA SCA
Bioinformatics, July 15, 2007; 23(14): 1792 - 1800.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
A. Labarga, F. Valentin, M. Anderson, and R. Lopez
Web Services at the European Bioinformatics Institute
Nucleic Acids Res., July 13, 2007; 35(suppl_2): W6 - W11.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
S. H. Nagaraj, N. Deshpande, R. B. Gasser, and S. Ranganathan
ESTExplorer: an expressed sequence tag (EST) assembly and annotation platform
Nucleic Acids Res., July 13, 2007; 35(suppl_2): W143 - W147.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
G. Lopez, A. Valencia, and M. L. Tress
firestar--prediction of functionally important residues using structural templates and alignment reliability
Nucleic Acids Res., July 13, 2007; 35(suppl_2): W573 - W577.
[Abstract] [Full Text] [PDF]

Home page
 Mol. Cell. ProteomicsHome page
J. Adachi, C. Kumar, Y. Zhang, and M. Mann
In-depth Analysis of the Adipocyte Proteome by Mass Spectrometry and Bioinformatics
Mol. Cell. Proteomics, July 1, 2007; 6(7): 1257 - 1273.
[Abstract] [Full Text] [PDF]

Home page
 Mol. Cell. ProteomicsHome page
B. Macek, I. Mijakovic, J. V. Olsen, F. Gnad, C. Kumar, P. R. Jensen, and M. Mann
The Serine/Threonine/Tyrosine Phosphoproteome of the Model Bacterium Bacillus subtilis
Mol. Cell. Proteomics, April 1, 2007; 6(4): 697 - 707.
[Abstract] [Full Text] [PDF]

Home page
 Brief BioinformHome page
S. H. Nagaraj, R. B. Gasser, and S. Ranganathan
A hitchhiker's guide to expressed sequence tag (EST) analysis
Brief Bioinform, January 1, 2007; 8(1): 6 - 21.
[Abstract] [Full Text] [PDF]

Home page
 Integr. Comp. Biol.Home page
D. S. Durica, D. Kupfer, F. Najar, H. Lai, Y. Tang, K. Griffin, P. M. Hopkins, and B. Roe
EST library sequencing of genes expressed during early limb regeneration in the fiddler crab and transcriptional responses to ecdysteroid exposure in limb bud explants
Integr. Comp. Biol., December 1, 2006; 46(6): 948 - 964.
[Abstract] [Full Text] [PDF]

Home page
 Mol. Cell. ProteomicsHome page
Q. W. T. Chan, C. G. Howes, and L. J. Foster
Quantitative Comparison of Caste Differences in Honeybee Hemolymph
Mol. Cell. Proteomics, December 1, 2006; 5(12): 2252 - 2262.
[Abstract] [Full Text] [PDF]


Disclaimer:
Please note that abstracts for content published before 1996 were created through digital scanning and may therefore not exactly replicate the text of the original print issues. All efforts have been made to ensure accuracy, but the Publisher will not be held responsible for any remaining inaccuracies. If you require any further clarification, please contact our Customer Services Department.