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Bioinformatics Advance Access originally published online on July 19, 2005
Bioinformatics 2005 21(18):3691-3693; doi:10.1093/bioinformatics/bti589
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PACdb: PolyA Cleavage Site and 3'-UTR Database

J. Michael Brockman 1,2,{dagger}, Priyam Singh 1,2,{dagger}, Donglin Liu 1, Sean Quinlan 2, Jesse Salisbury 1,3 and Joel H. Graber 1,2,3,*

1The Jackson Laboratory Bar Harbor, ME 04609, USA
2Bioinformatics Program, Boston University Boston,MA 02215, USA
3Functional Genomics Program, University of Maine Orono, ME 04469, USA

*To whom correspondence should be addressed.

Summary: The PolyA Cleavage Site and 3'-UTR Database (PACdb) is a web-accessible database that catalogs putative 3'-processing sites and 3'-UTR sequences for multiple organisms. Sites have been identified primarily via expressed sequence tag-genome alignments, enabling delineation of both the specificities and heterogeneity of 3'-processing events.

Availability: By web browser or CGI: PACdb: http://harlequin.jax.org/pacdb/; AtPACdb: http://harlequin.jax.org/atpacdb/

Contact: joel.graber{at}jax.org

Supplementary information: Available online at http://harlequin.jax.org/pacdb/supplemental.php

Received on March 25, 2005; revised on June 25, 2005; accepted on July 14, 2005

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