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Bioinformatics Advance Access originally published online on July 26, 2005
Bioinformatics 2005 21(19):3794-3796; doi:10.1093/bioinformatics/bti594
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© The Author 2005. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions{at}oxfordjournals.org

pIQPNNI: parallel reconstruction of large maximum likelihood phylogenies

Bui Quang Minh 1, Le Sy Vinh 2, Arndt von Haeseler 3,* and Heiko A. Schmidt 2

1Albert-Ludwigs-University Freiburg, Germany
2NIC FZ Jülich, Germany
3Heinrich-Heine-University Düsseldorf, Germany

*To whom correspondence should be addressed.

Summary: IQPNNI is a program to infer maximum-likelihood phylogenetic trees from DNA or protein data with a large number of sequences. We present an improved and MPI-parallel implementation showing very good scaling and speedup behavior.

Availability: IQPNNI (http://www.bi.uni-duesseldorf.de/software/iqpnni) is written in C++, executable on UNIX/Linux, Windows and MacOS systems. (Free) MPI libraries can be found at http://www.lam-mpi.org/mpi/implementations/.

Contact: haeseler{at}cs.uni-duesseldorf.de

Received on July 5, 2005; revised on July 20, 2005; accepted on July 21, 2005

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