Bioinformatics Advance Access originally published online on August 5, 2004
Bioinformatics 2005 21(2):263-265; doi:10.1093/bioinformatics/bth457
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Bioinformatics vol. 21 issue 2 © Oxford University Press 2005; all rights reserved.
Haploview: analysis and visualization of LD and haplotype maps
1 Whitehead Institute for Biomedical Research Cambridge, MA 02142, USA
2 MIT Media Lab Cambridge, MA 02139, USA
3 Broad Institute of Harvard and MIT Cambridge, MA, USA
*To whom correspondence should be addressed.
Summary: Research over the last few years has revealed significant haplotype structure in the human genome. The characterization of these patterns, particularly in the context of medical genetic association studies, is becoming a routine research activity. Haploview is a software package that provides computation of linkage disequilibrium statistics and population haplotype patterns from primary genotype data in a visually appealing and interactive interface.
Availability: http://www.broad.mit.edu/mpg/haploview/
Contact: jcbarret{at}broad.mit.edu
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|
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|
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|
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|
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|
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|
|
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|
|
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|
|
|
|
|
|
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|
|
|
|
 |
|
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|
|
|
|
|
|
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|
|
|
|
|
|
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|
|
|
|
 |
|
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|
|
|
|
 |
|
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|
|
|
|
|
|
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|
|
|
|
|
|
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|
|
|
|
|
|
R. Li, C. Xue, C. Li, T. Lou, Y. Tao, Y. Li, W. Huang, J. Zhang, J. C. K. Leung, M. F. Lam, et al. TRAC Variants Associate with IgA Nephropathy J. Am. Soc. Nephrol., June 1, 2009; 20(6): 1359 - 1367. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 E. Cochery-Nouvellon, P. Nguyen, R. Attaoua, P. Cornillet-Lefebvre, E. Mercier, F. Vitry, and J.-C. Gris Interleukin 10 Gene Promoter Polymorphisms in Women with Pregnancy Loss: Preferential Association with Embryonic Wastage Biol Reprod, June 1, 2009; 80(6): 1115 - 1120. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 L. B. Scheinfeldt, S. Biswas, J. Madeoy, C. F. Connelly, E. E. Schadt, and J. M. Akey Population Genomic Analysis of ALMS1 in Humans Reveals a Surprisingly Complex Evolutionary History Mol. Biol. Evol., June 1, 2009; 26(6): 1357 - 1367. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 P. I.W. de Bakker Selection and Evaluation of Tag-SNPs Using Tagger and HapMap CSH Protocols, June 1, 2009; 2009(6): pdb.ip67 - pdb.ip67. [Abstract] [Full Text]
|
|
|
|
 |
|
 I. Silva-Zolezzi, A. Hidalgo-Miranda, J. Estrada-Gil, J. C. Fernandez-Lopez, L. Uribe-Figueroa, A. Contreras, E. Balam-Ortiz, L. del Bosque-Plata, D. Velazquez-Fernandez, C. Lara, et al. Analysis of genomic diversity in Mexican Mestizo populations to develop genomic medicine in Mexico PNAS, May 26, 2009; 106(21): 8611 - 8616. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 D.-A. Tregouet, S. Heath, N. Saut, C. Biron-Andreani, J.-F. Schved, G. Pernod, P. Galan, L. Drouet, D. Zelenika, I. Juhan-Vague, et al. Common susceptibility alleles are unlikely to contribute as strongly as the FV and ABO loci to VTE risk: results from a GWAS approach Blood, May 21, 2009; 113(21): 5298 - 5303. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 K. Ganguly, M. Depner, C. Fattman, K. Bein, T. D. Oury, S. C. Wesselkamper, M. T. Borchers, M. Schreiber, F. Gao, E. von Mutius, et al. Superoxide dismutase 3, extracellular (SOD3) variants and lung function Physiol Genomics, May 13, 2009; 37(3): 260 - 267. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
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|
|
|
|
|
|
J. Koshiol, A. Hildesheim, P. Gonzalez, M. C. Bratti, C. Porras, M. Schiffman, R. Herrero, A. C. Rodriguez, S. Wacholder, M. Yeager, et al. Common Genetic Variation in TP53 and Risk of Human Papillomavirus Persistence and Progression to CIN3/Cancer Revisited Cancer Epidemiol. Biomarkers Prev., May 1, 2009; 18(5): 1631 - 1637. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
P. Rajaraman, A. V. Brenner, M. A. Butler, S. S. Wang, R. M. Pfeiffer, A. M. Ruder, M. S. Linet, M. Yeager, Z. Wang, N. Orr, et al. Common Variation in Genes Related to Innate Immunity and Risk of Adult Glioma Cancer Epidemiol. Biomarkers Prev., May 1, 2009; 18(5): 1651 - 1658. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
S.-F. Lei, L.-J. Tan, X.-G. Liu, L. Wang, H. Yan, Y.-F. Guo, Y.-Z. Liu, D.-H. Xiong, J. Li, T.-L. Yang, et al. Genome-wide association study identifies two novel loci containing FLNB and SBF2 genes underlying stature variation Hum. Mol. Genet., May 1, 2009; 18(9): 1661 - 1669. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
S. P. Kallio, E. Jakkula, S. Purcell, M. Suvela, K. Koivisto, P. J. Tienari, I. Elovaara, T. Pirttila, M. Reunanen, D. Bronnikov, et al. Use of a genetic isolate to identify rare disease variants: C7 on 5p associated with MS Hum. Mol. Genet., May 1, 2009; 18(9): 1670 - 1683. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
O. J. Brand, J. C. Barrett, M. J. Simmonds, P. R. Newby, C. J. McCabe, C. K. Bruce, B. Kysela, J. D. Carr-Smith, T. Brix, P. J. Hunt, et al. Association of the thyroid stimulating hormone receptor gene (TSHR) with Graves' disease Hum. Mol. Genet., May 1, 2009; 18(9): 1704 - 1713. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J. Licinio, C. Dong, and M.-L. Wong Novel Sequence Variations in the Brain-Derived Neurotrophic Factor Gene and Association With Major Depression and Antidepressant Treatment Response Arch Gen Psychiatry, May 1, 2009; 66(5): 488 - 496. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J. Rojas, I. Fernandez, J. C. Pastor, M.-T. Garcia-Gutierrez, R.-M. Sanabria, M. Brion, B. Sobrino, L. Manzanas, A. Giraldo, E. Rodriguez-de la Rua, et al. Development of Predictive Models of Proliferative Vitreoretinopathy Based on Genetic Variables: The Retina 4 Project Invest. Ophthalmol. Vis. Sci., May 1, 2009; 50(5): 2384 - 2390. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 K. E. Roberts, M. B. Fallon, M. J. Krowka, R. S. Brown, J. F. Trotter, I. Peter, H. Tighiouart, J. A. Knowles, D. Rabinowitz, R. L. Benza, et al. Genetic Risk Factors for Portopulmonary Hypertension in Patients with Advanced Liver Disease Am. J. Respir. Crit. Care Med., May 1, 2009; 179(9): 835 - 842. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 I. D. Bezemer, A. R. Arellano, C. H. Tong, C. M. Rowland, H. A. Ireland, K. A. Bauer, J. Catanese, P. H. Reitsma, C. J.M. Doggen, J. J. Devlin, et al. F9 Malmo, factor IX and deep vein thrombosis Haematologica, May 1, 2009; 94(5): 693 - 699. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 L. Gao and K. C. Barnes Recent advances in genetic predisposition to clinical acute lung injury Am J Physiol Lung Cell Mol Physiol, May 1, 2009; 296(5): L713 - L725. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 E. Sonestedt, M. I. L. Ivarsson, S. Harlid, U. Ericson, B. Gullberg, J. Carlson, H. Olsson, H. Adlercreutz, and E. Wirfalt The Protective Association of High Plasma Enterolactone with Breast Cancer Is Reasonably Robust in Women with Polymorphisms in the Estrogen Receptor {alpha} and {beta} Genes J. Nutr., May 1, 2009; 139(5): 993 - 1001. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
A. Chio, J. C. Schymick, G. Restagno, S. W. Scholz, F. Lombardo, S.-L. Lai, G. Mora, H.-C. Fung, A. Britton, S. Arepalli, et al. A two-stage genome-wide association study of sporadic amyotrophic lateral sclerosis Hum. Mol. Genet., April 15, 2009; 18(8): 1524 - 1532. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 A. E. Hoffman, T. Zheng, R. G. Stevens, Y. Ba, Y. Zhang, D. Leaderer, C. Yi, T. R. Holford, and Y. Zhu Clock-Cancer Connection in Non-Hodgkin's Lymphoma: A Genetic Association Study and Pathway Analysis of the Circadian Gene Cryptochrome 2 Cancer Res., April 15, 2009; 69(8): 3605 - 3613. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
H. Chen, D. Yu, A. Luo, W. Tan, C. Zhang, D. Zhao, M. Yang, J. Liu, D. Lin, and Z. Liu Functional Role of S100A14 Genetic Variants and Their Association with Esophageal Squamous Cell Carcinoma Cancer Res., April 15, 2009; 69(8): 3451 - 3457. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 M. You, D. Wang, P. Liu, H. Vikis, M. James, Y. Lu, Y. Wang, M. Wang, Q. Chen, D. Jia, et al. Fine Mapping of Chromosome 6q23-25 Region in Familial Lung Cancer Families Reveals RGS17 as a Likely Candidate Gene Clin. Cancer Res., April 15, 2009; 15(8): 2666 - 2674. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
C. O. Jacob, J. Zhu, D. L. Armstrong, M. Yan, J. Han, X. J. Zhou, J. A. Thomas, A. Reiff, B. L. Myones, J. O. Ojwang, et al. Identification of IRAK1 as a risk gene with critical role in the pathogenesis of systemic lupus erythematosus PNAS, April 14, 2009; 106(15): 6256 - 6261. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 D. Rezgui, C. Williams, S. A Savage, S. N Prince, O. J Zaccheo, E Y. Jones, M. P Crump, and A B. Hassan Structure and function of the human Gly1619Arg polymorphism of M6P/IGF2R domain 11 implicated in IGF2 dependent growth J. Mol. Endocrinol., April 1, 2009; 42(4): 341 - 356. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
B.-L. Chang, S. D. Cramer, F. Wiklund, S. D. Isaacs, V. L. Stevens, J. Sun, S. Smith, K. Pruett, L. M. Romero, K. E. Wiley, et al. Fine mapping association study and functional analysis implicate a SNP in MSMB at 10q11 as a causal variant for prostate cancer risk Hum. Mol. Genet., April 1, 2009; 18(7): 1368 - 1375. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 N. S. Wratten, H. Memoli, Y. Huang, A. M. Dulencin, P. G. Matteson, M. A. Cornacchia, M. A. Azaro, J. Messenger, J. E. Hayter, A. S. Bassett, et al. Identification of a Schizophrenia-Associated Functional Noncoding Variant in NOS1AP Am J Psychiatry, April 1, 2009; 166(4): 434 - 441. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
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|
|
|
|
 |
|
 J. T. Ou, S. Q. Tang, D. X. Sun, and Y. Zhang Polymorphisms of three neuroendocrine-correlated genes associated with growth and reproductive traits in the chicken Poult. Sci., April 1, 2009; 88(4): 722 - 727. [Abstract] [Full Text] [PDF]
|
|
|
|
|
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S. Park, Y. Jamshidi, D. Vaideanu, M. Bitner-Glindzicz, S. Fraser, and J. C. Sowden Genetic Risk for Primary Open-Angle Glaucoma Determined by LMX1B Haplotypes Invest. Ophthalmol. Vis. Sci., April 1, 2009; 50(4): 1522 - 1530. [Abstract] [Full Text] [PDF]
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 H. Wang, N. P. Hays, S. K. Das, R. L. Craig, W. S. Chu, N. Sharma, and S. C. Elbein Phenotypic and Molecular Evaluation of a Chromosome 1q Region with Linkage and Association to Type 2 Diabetes in Humans J. Clin. Endocrinol. Metab., April 1, 2009; 94(4): 1401 - 1408. [Abstract] [Full Text] [PDF]
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M. J. B. Villano, A. K. Huber, D. A. Greenberg, B. K. Golden, E. Concepcion, and Y. Tomer Autoimmune Thyroiditis and Diabetes: Dissecting the Joint Genetic Susceptibility in a Large Cohort of Multiplex Families J. Clin. Endocrinol. Metab., April 1, 2009; 94(4): 1458 - 1466. [Abstract] [Full Text] [PDF]
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A. Beeghly-Fadiel, Q. Cai, W. Lu, J. Long, Y.-T. Gao, X.-o. Shu, and W. Zheng No Association between Matrix Metalloproteinase-1 or Matrix Metalloproteinase-3 Polymorphisms and Breast Cancer Susceptibility: A Report from the Shanghai Breast Cancer Study Cancer Epidemiol. Biomarkers Prev., April 1, 2009; 18(4): 1324 - 1327. [Full Text] [PDF]
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L. M. Morton, M. P. Purdue, T. Zheng, S. S. Wang, B. Armstrong, Y. Zhang, I. Menashe, N. Chatterjee, S. Davis, Q. Lan, et al. Risk of Non-Hodgkin Lymphoma Associated with Germline Variation in Genes that Regulate the Cell Cycle, Apoptosis, and Lymphocyte Development Cancer Epidemiol. Biomarkers Prev., April 1, 2009; 18(4): 1259 - 1270. [Abstract] [Full Text] [PDF]
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J. P. Breyer, M. E. Sanders, D. C. Airey, Q. Cai, B. L. Yaspan, P. A. Schuyler, Q. Dai, F. Boulos, M. G. Olivares, K. M. Bradley, et al. Heritable Variation of ERBB2 and Breast Cancer Risk Cancer Epidemiol. Biomarkers Prev., April 1, 2009; 18(4): 1252 - 1258. [Abstract] [Full Text] [PDF]
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 Y. Zha, K. H. Leung, K. K. Lo, W. Y. Fung, P. W. Ng, M.-g. Shi, M. K. H. Yap, and S. P. Yip TGFB1 as a Susceptibility Gene for High Myopia: A Replication Study With New Findings Arch Ophthalmol, April 1, 2009; 127(4): 541 - 548. [Abstract] [Full Text] [PDF]
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S. K. Park, G. Andreotti, L. C. Sakoda, Y.-T. Gao, A. Rashid, J. Chen, B. E. Chen, P. S. Rosenberg, M.-C. Shen, B.-S. Wang, et al. Variants in hormone-related genes and the risk of biliary tract cancers and stones: a population-based study in China Carcinogenesis, April 1, 2009; 30(4): 606 - 614. [Abstract] [Full Text] [PDF]
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 J. S. Danik, G. Pare, D. I. Chasman, R. Y.L. Zee, D. J. Kwiatkowski, A. Parker, J. P. Miletich, and P. M Ridker Novel Loci, Including Those Related to Crohn Disease, Psoriasis, and Inflammation, Identified in a Genome-Wide Association Study of Fibrinogen in 17 686 Women: The Women's Genome Health Study Circ Cardiovasc Genet, April 1, 2009; 2(2): 134 - 141. [Abstract] [Full Text] [PDF]
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J. G. Smith, O. Melander, H. Lovkvist, B. Hedblad, G. Engstrom, P. Nilsson, J. Carlson, G. Berglund, B. Norrving, and A. Lindgren Common Genetic Variants on Chromosome 9p21 Confers Risk of Ischemic Stroke: A Large-Scale Genetic Association Study Circ Cardiovasc Genet, April 1, 2009; 2(2): 159 - 164. [Abstract] [Full Text] [PDF]
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 W. C. Leung, S. Hessel, C. Meplan, J. Flint, V. Oberhauser, F. Tourniaire, J. E. Hesketh, J. von Lintig, and G. Lietz Two common single nucleotide polymorphisms in the gene encoding {beta}-carotene 15,15'-monoxygenase alter {beta}-carotene metabolism in female volunteers FASEB J, April 1, 2009; 23(4): 1041 - 1053. [Abstract] [Full Text] [PDF]
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F.-C. Hsu, J. Sun, F. Wiklund, S. D. Isaacs, K. E. Wiley, L. D. Purcell, Z. Gao, P. Stattin, Y. Zhu, S.-T. Kim, et al. A Novel Prostate Cancer Susceptibility Locus at 19q13 Cancer Res., April 1, 2009; 69(7): 2720 - 2723. [Abstract] [Full Text] [PDF]
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N. D. Shephard, R. Abo, S. H. Rigas, B. Frank, W.-Y. Lin, I. W. Brock, A. Shippen, S. P. Balasubramanian, M. W. R. Reed, C. R. Bartram, et al. A Breast Cancer Risk Haplotype in the Caspase-8 Gene Cancer Res., April 1, 2009; 69(7): 2724 - 2728. [Abstract] [Full Text] [PDF]
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T. Lencz, R. H. Lipsky, P. DeRosse, K. E. Burdick, J. M. Kane, and A. K. Malhotra Molecular differentiation of schizoaffective disorder from schizophrenia using BDNF haplotypes The British Journal of Psychiatry, April 1, 2009; 194(4): 313 - 318. [Abstract] [Full Text] [PDF]
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C. Wang, C. Hu, R. Zhang, Y. Bao, X. Ma, J. Lu, W. Qin, X. Shao, J. Lu, J. Xu, et al. Common Variants of Hepatocyte Nuclear Factor 1{beta} Are Associated With Type 2 Diabetes in a Chinese Population Diabetes, April 1, 2009; 58(4): 1023 - 1027. [Abstract] [Full Text] [PDF]
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 M. M. Gray, J. M. Granka, C. D. Bustamante, N. B. Sutter, A. R. Boyko, L. Zhu, E. A. Ostrander, and R. K. Wayne Linkage Disequilibrium and Demographic History of Wild and Domestic Canids Genetics, April 1, 2009; 181(4): 1493 - 1505. [Abstract] [Full Text] [PDF]
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P. L. De Jager, C. Baecher-Allan, L. M. Maier, A. T. Arthur, L. Ottoboni, L. Barcellos, J. L. McCauley, S. Sawcer, A. Goris, J. Saarela, et al. The role of the CD58 locus in multiple sclerosis PNAS, March 31, 2009; 106(13): 5264 - 5269. [Abstract] [Full Text] [PDF]
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L. L.E. Koskinen, E. Einarsdottir, E. Dukes, G. A. R. Heap, P. Dubois, I. R. Korponay-Szabo, K. Kaukinen, K. Kurppa, F. Ziberna, S. Vatta, et al. Association study of the IL18RAP locus in three European populations with coeliac disease Hum. Mol. Genet., March 15, 2009; 18(6): 1148 - 1155. [Abstract] [Full Text] [PDF]
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H.-D. Song, J. Liang, J.-Y. Shi, S.-X. Zhao, Z. Liu, J.-J. Zhao, Y.-D. Peng, G.-Q. Gao, J. Tao, C.-M. Pan, et al. Functional SNPs in the SCGB3A2 promoter are associated with susceptibility to Graves' disease Hum. Mol. Genet., March 15, 2009; 18(6): 1156 - 1170. [Abstract] [Full Text] [PDF]
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S. Han, X. Kim-Howard, H. Deshmukh, Y. Kamatani, P. Viswanathan, J. M. Guthridge, K. Thomas, K. M. Kaufman, J. Ojwang, A. Rojas-Villarraga, et al. Evaluation of imputation-based association in and around the integrin-{alpha}-M (ITGAM) gene and replication of robust association between a non-synonymous functional variant within ITGAM and systemic lupus erythematosus (SLE) Hum. Mol. Genet., March 15, 2009; 18(6): 1171 - 1180. [Abstract] [Full Text] [PDF]
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M. H. Sohn, J. H. Lee, K. W. Kim, S. W. Kim, S. H. Lee, K.-E. Kim, K. H. Kim, C. G. Lee, J. A. Elias, and M. G. Lee Genetic Variation in the Promoter Region of Chitinase 3-Like 1 Is Associated with Atopy Am. J. Respir. Crit. Care Med., March 15, 2009; 179(6): 449 - 456. [Abstract] [Full Text] [PDF]
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W. Liu, J. Sun, G. Li, Y. Zhu, S. Zhang, S.-T. Kim, J. Sun, F. Wiklund, K. Wiley, S. D. Isaacs, et al. Association of a Germ-Line Copy Number Variation at 2p24.3 and Risk for Aggressive Prostate Cancer Cancer Res., March 15, 2009; 69(6): 2176 - 2179. [Abstract] [Full Text] [PDF]
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M. C. Aldrich, S. Selvin, H. M. Hansen, L. F. Barcellos, M. R. Wrensch, J. D. Sison, K. T. Kelsey, P. A. Buffler, C. P. Quesenberry Jr., M. F. Seldin, et al. CYP1A1/2 Haplotypes and Lung Cancer and Assessment of Confounding by Population Stratification Cancer Res., March 15, 2009; 69(6): 2340 - 2348. [Abstract] [Full Text] [PDF]
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J. M. Schildkraut, E. L. Goode, M. A. Clyde, E. S. Iversen, P. G. Moorman, A. Berchuck, J. R. Marks, J. Lissowska, L. Brinton, B. Peplonska, et al. Single Nucleotide Polymorphisms in the TP53 Region and Susceptibility to Invasive Epithelial Ovarian Cancer Cancer Res., March 15, 2009; 69(6): 2349 - 2357. [Abstract] [Full Text] [PDF]
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M. E. Sehl, L. R. Langer, J. C. Papp, L. Kwan, J. L. Seldon, G. Arellano, J. Reiss, E. F. Reed, S. Dandekar, Y. Korin, et al. Associations between Single Nucleotide Polymorphisms in Double-Stranded DNA Repair Pathway Genes and Familial Breast Cancer Clin. Cancer Res., March 15, 2009; 15(6): 2192 - 2203. [Abstract] [Full Text] [PDF]
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Y. H. Park, S. K. Sohn, J. G. Kim, M.-H. Lee, H. S. Song, M. K. Kim, J. S. Jung, J.-J. Lee, H. J. Kim, and D. H. Kim Interaction between BCL2 and Interleukin-10 Gene Polymorphisms Alter Outcomes of Diffuse Large B-Cell Lymphoma following Rituximab Plus CHOP Chemotherapy Clin. Cancer Res., March 15, 2009; 15(6): 2107 - 2115. [Abstract] [Full Text] [PDF]
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U. Nowak-Gottl, B. Frohlich, S. Thedieck, A. Huge, and M. Stoll Association of the protein Z ATG haplotype with symptomatic nonvascular stroke or thromboembolism in white children: a family-based cohort study Blood, March 5, 2009; 113(10): 2336 - 2341. [Abstract] [Full Text] [PDF]
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M. T. Vuong, S. Lundberg, I. Gunnarsson, L. Wramner, M. Seddighzadeh, M. Hahn-Zoric, A. Fernstrom, L. A Hanson, L. T. Do, S. H. Jacobson, et al. Genetic variation in the transforming growth factor-{beta}1 gene is associated with susceptibility to IgA nephropathy Nephrol. Dial. Transplant., March 3, 2009; (2009) gfp079v1. [Abstract] [Full Text] [PDF]
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 E Sanchez, M. Gonzalez-Gay, J. Callejas-Rubio, N Ortego-Centeno, J. Sabio, J Jimenez-Alonso, L Mico, A Suarez, C Gutierrez, E de Ramon, et al. No evidence for genetic association of interferon regulatory factor 3 in systemic lupus erythematosus Lupus, March 1, 2009; 18(3): 230 - 234. [Abstract] [PDF]
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E. T. Chang, B. M. Birmann, J. L. Kasperzyk, D. V. Conti, P. Kraft, R. F. Ambinder, T. Zheng, and N. E. Mueller Polymorphic Variation in NFKB1 and Other Aspirin-Related Genes and Risk of Hodgkin Lymphoma Cancer Epidemiol. Biomarkers Prev., March 1, 2009; 18(3): 976 - 986. [Abstract] [Full Text] [PDF]
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