Skip Navigation


Bioinformatics Advance Access originally published online on September 27, 2005
Bioinformatics 2005 21(24):4432-4433; doi:10.1093/bioinformatics/bti696
This Article
Right arrow Full Text Freely available
Right arrow FREE Full Text (Print PDF) Freely available
Right arrow All Versions of this Article:
21/24/4432    most recent
bti696v1
Right arrow Comments: Submit a response
Right arrow Alert me when this article is cited
Right arrow Alert me when Comments are posted
Right arrow Alert me if a correction is posted
Services
Right arrow Email this article to a friend
Right arrow Similar articles in this journal
Right arrow Similar articles in ISI Web of Science
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Add to My Personal Archive
Right arrow Download to citation manager
Right arrow Search for citing articles in:
ISI Web of Science (8)
Right arrowRequest Permissions
Google Scholar
Right arrow Articles by Hooper, S. D.
Right arrow Articles by Bork, P.
Right arrow Search for Related Content
PubMed
Right arrow PubMed Citation
Right arrow Articles by Hooper, S. D.
Right arrow Articles by Bork, P.
Social Bookmarking
Add to CiteULike   Add to Connotea   Add to Del.icio.us  
What's this?

© The Author 2005. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions{at}oxfordjournals.org

Medusa: a simple tool for interaction graph analysis

Sean D. Hooper 1,* and Peer Bork 1,2

1European Molecular Biology Laboratory Heidelberg, Germany
2Max Delbrück Center for Molecular Medicine Berlin-Buch, Germany

*To whom correspondence should be addressed.

Summary: Medusa is a Java application for visualizing and manipulating graphs of interaction, such as data from the STRING database. It features an intuitive user interface developed with the help of biologists. Medusa is optimized for accessing protein interaction data from STRING, but can be used for any type of graph from any scientific field.

Availability: Medusa, along with sample datasets and instructions, can be downloaded from http://www.bork.embl.de/medusa

Contact: hooper{at}embl.de

Received on June 28, 2005; revised on September 13, 2005; accepted on September 26, 2005

Add to CiteULike CiteULike   Add to Connotea Connotea   Add to Del.icio.us Del.icio.us    What's this?


This article has been cited by other articles:


Home page
 Nucleic Acids ResHome page
A. Schlicker and M. Albrecht
FunSimMat update: new features for exploring functional similarity
Nucleic Acids Res., November 18, 2009; (2009) gkp979v1.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
A. S. Syed, M. D'Antonio, and F. D. Ciccarelli
Network of Cancer Genes: a web resource to analyze duplicability, orthology and network properties of cancer genes
Nucleic Acids Res., November 11, 2009; (2009) gkp957v1.
[Abstract] [Full Text] [PDF]

Home page
 BioinformaticsHome page
K. Kandasamy, S. Keerthikumar, R. Raju, T. S. Keshava Prasad, Y. L. Ramachandra, S. Mohan, and A. Pandey
PathBuilder--open source software for annotating and developing pathway resources
Bioinformatics, November 1, 2009; 25(21): 2860 - 2862.
[Abstract] [Full Text] [PDF]

Home page
 J R Soc InterfaceHome page
J. P. Goncalves, M. Graos, and A. X.C.N. Valente
POLAR MAPPER: a computational tool for integrated visualization of protein interaction networks and mRNA expression data
J R Soc Interface, October 6, 2009; 6(39): 881 - 896.
[Abstract] [Full Text] [PDF]

Home page
 BioinformaticsHome page
G. A. Pavlopoulos, C. N. Moschopoulos, S. D. Hooper, R. Schneider, and S. Kossida
jClust: a clustering and visualization toolbox
Bioinformatics, August 1, 2009; 25(15): 1994 - 1996.
[Abstract] [Full Text] [PDF]

Home page
 BioinformaticsHome page
E. Chautard, L. Ballut, N. Thierry-Mieg, and S. Ricard-Blum
MatrixDB, a database focused on extracellular protein-protein and protein-carbohydrate interactions
Bioinformatics, March 1, 2009; 25(5): 690 - 691.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
M. A. A. Castro, R. J. S. Dalmolin, J. C. F. Moreira, J. C. M. Mombach, and R. M. C. de Almeida
Evolutionary origins of human apoptosis and genome-stability gene networks
Nucleic Acids Res., November 1, 2008; 36(19): 6269 - 6283.
[Abstract] [Full Text] [PDF]

Home page
 BioinformaticsHome page
S. Zheng, J. Sheng, C. Wang, X. Wang, Y. Yu, Y. Li, A. Michie, J. Dai, Y. Zhong, P. Hao, et al.
MPSQ: a web tool for protein-state searching
Bioinformatics, October 15, 2008; 24(20): 2412 - 2413.
[Abstract] [Full Text] [PDF]

Home page
 Mol. Cell. Biol.Home page
M.-E. Caruso, S. Jenna, M. Bouchecareilh, D. L. Baillie, D. Boismenu, D. Halawani, M. Latterich, and E. Chevet
GTPase-Mediated Regulation of the Unfolded Protein Response in Caenorhabditis elegans Is Dependent on the AAA+ ATPase CDC-48
Mol. Cell. Biol., July 1, 2008; 28(13): 4261 - 4274.
[Abstract] [Full Text] [PDF]

Home page
 BioinformaticsHome page
M. Klammer, S. Roopra, and E. L. L. Sonnhammer
jSquid: a Java applet for graphical on-line network exploration
Bioinformatics, June 15, 2008; 24(12): 1467 - 1468.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
J. Cui, P. Li, G. Li, F. Xu, C. Zhao, Y. Li, Z. Yang, G. Wang, Q. Yu, Y. Li, et al.
AtPID: Arabidopsis thaliana protein interactome database an integrative platform for plant systems biology
Nucleic Acids Res., January 11, 2008; 36(suppl_1): D999 - D1008.
[Abstract] [Full Text] [PDF]

Home page
 Brief BioinformHome page
B. S. Srinivasan, N. H. Shah, J. A. Flannick, E. Abeliuk, A. F. Novak, and S. Batzoglou
Current progress in network research: toward reference networks for key model organisms
Brief Bioinform, September 1, 2007; 8(5): 318 - 332.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
M. A. A. Castro, J. C. M. Mombach, R. M. C. de Almeida, and J. C. F. Moreira
Impaired expression of NER gene network in sporadic solid tumors
Nucleic Acids Res., March 19, 2007; 35(6): 1859 - 1867.
[Abstract] [Full Text] [PDF]

Home page
 BioinformaticsHome page
S.-E. Hong, S.-H. Rho, Y. I. Yeom, and D. H. Kim
HCNet: a database of heart and calcium functional network
Bioinformatics, August 15, 2006; 22(16): 2053 - 2054.
[Abstract] [Full Text] [PDF]


Disclaimer: Please note that abstracts for content published before 1996 were created through digital scanning and may therefore not exactly replicate the text of the original print issues. All efforts have been made to ensure accuracy, but the Publisher will not be held responsible for any remaining inaccuracies. If you require any further clarification, please contact our Customer Services Department.