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Bioinformatics Advance Access originally published online on September 16, 2004
Bioinformatics 2005 21(4):557-559; doi:10.1093/bioinformatics/bti024
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Bioinformatics vol. 21 issue 4 © Oxford University Press 2005; all rights reserved.

MAP-O-MAT: internet-based linkage mapping

X. Kong and T. C. Matise *

Department of Genetics, Rutgers University Piscataway NJ 08854, USA

*To whom correspondence should be addressed.

Summary: MAP-O-MAT is a web-based server for automated linkage mapping of human polymorphic DNA markers. MAP-O-MAT facilitates the verification of order and map distances for custom mapping sets using genotype data from the CEPH database, and from the Marshfield, SNP Consortium and Rutgers linkage maps (exclusive to the deCODE genotyping data). The CRI-MAP program is used for likelihood calculations and some mapping algorithms, and physical map positions are provided from the human genome assembly.

Availability: MAP-O-MAT is located at http://compgen.rutgers.edu/mapomat/

Contact: matise{at}biology.rutgers.edu


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