Bioinformatics Advance Access originally published online on October 27, 2004
Bioinformatics 2005 21(5):676-679; doi:10.1093/bioinformatics/bti079
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HyPhy: hypothesis testing using phylogenies
1 Antiviral Research Center, University of California San Diego San Diego, CA 92103, USA
2 Bioinformatics Research Center, North Carolina State University Raleigh NC 27695-7566, USA
*To whom correspondence should be addressed.
Summary: The HyPhypackage is designed to provide a flexible and unified platform for carrying out likelihood-based analyses on multiple alignments of molecular sequence data, with the emphasis on studies of rates and patterns of sequence evolution.
Availability: http://www.hyphy.org
Contact: muse{at}stat.ncsu.edu
Supplementary information: HyPhydocumentation and tutorials are available at http://www.hyphy.org
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