Skip Navigation


Bioinformatics Advance Access originally published online on November 5, 2004
Bioinformatics 2005 21(6):821-822; doi:10.1093/bioinformatics/bti113
This Article
Right arrow Full Text Freely available
Right arrow FREE Full Text (Print PDF) Freely available
Right arrow All Versions of this Article:
21/6/821    most recent
bti113v1
Right arrow Alert me when this article is cited
Right arrow Alert me if a correction is posted
Services
Right arrow Email this article to a friend
Right arrow Similar articles in this journal
Right arrow Similar articles in ISI Web of Science
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Add to My Personal Archive
Right arrow Download to citation manager
Right arrow Search for citing articles in:
ISI Web of Science (36)
Right arrowRequest Permissions
Google Scholar
Right arrow Articles by Lingjærde, O. C.
Right arrow Articles by Børresen-Dale, A.-L.
Right arrow Search for Related Content
PubMed
Right arrow PubMed Citation
Right arrow Articles by Lingjærde, O. C.
Right arrow Articles by Børresen-Dale, A.-L.
Social Bookmarking
Add to CiteULike   Add to Connotea   Add to Del.icio.us  
What's this?

© The Author 2004. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions{at}oupjournals.org

CGH-Explorer: a program for analysis of array-CGH data

Ole Christian Lingjærde 1,*, Lars O. Baumbusch 2, Knut Liestøl 1, Ingrid K. Glad 3 and Anne-Lise Børresen-Dale 2

1Department of Informatics, University of Oslo PO Box 1080 Blindern, N-0316 Oslo, Norway
2Department of Genetics, Institute for Cancer Research, Norwegian Radium Hospital Montebello, N-0310 Oslo, Norway
3Department of Mathematics, University of Oslo PO Box 1053 Blindern, N-0316 Oslo, Norway

*To whom correspondence should be addressed.

Summary: CGH-Explorer is a program for visualization and statistical analysis of microarray-based comparative genomic hybridization (array-CGH) data. The program has preprocessing facilities, tools for graphical exploration of individual arrays or groups of arrays, and tools for statistical identification of regions of amplification and deletion.

Availability: The program is available as Java class files that runs on any platform with the Java 2 runtime environment (J2SE JRE) installed, and as a Windows executable. Java source files are also available. See http://www.ifi.uio.no/bioinf/Papers/CGH/

Contact: ole{at}ifi.uio.no


Add to CiteULike CiteULike   Add to Connotea Connotea   Add to Del.icio.us Del.icio.us    What's this?


This article has been cited by other articles:


Home page
 BioinformaticsHome page
C. Erdman and J. W. Emerson
A fast Bayesian change point analysis for the segmentation of microarray data
Bioinformatics, October 1, 2008; 24(19): 2143 - 2148.
[Abstract] [Full Text] [PDF]

Home page
 Molecular Cancer TherapeuticsHome page
K. S.M. Smalley, M. Lioni, M. D. Palma, M. Xiao, B. Desai, S. Egyhazi, J. Hansson, H. Wu, A. J. King, P. Van Belle, et al.
Increased cyclin D1 expression can mediate BRAF inhibitor resistance in BRAF V600E-mutated melanomas
Mol. Cancer Ther., September 1, 2008; 7(9): 2876 - 2883.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
I. Scheinin, S. Myllykangas, I. Borze, T. Bohling, S. Knuutila, and J. Saharinen
CanGEM: mining gene copy number changes in cancer
Nucleic Acids Res., January 11, 2008; 36(suppl_1): D830 - D835.
[Abstract] [Full Text] [PDF]

Home page
 Clin. Cancer Res.Home page
L. Melchor, E. Honrado, J. Huang, S. Alvarez, T. L. Naylor, M. J. Garcia, A. Osorio, D. Blesa, M. R. Stratton, B. L. Weber, et al.
Estrogen Receptor Status Could Modulate the Genomic Pattern in Familial and Sporadic Breast Cancer
Clin. Cancer Res., December 15, 2007; 13(24): 7305 - 7313.
[Abstract] [Full Text] [PDF]

Home page
 Cancer Res.Home page
J. Lapointe, C. Li, C. P. Giacomini, K. Salari, S. Huang, P. Wang, M. Ferrari, T. Hernandez-Boussard, J. D. Brooks, and J. R. Pollack
Genomic Profiling Reveals Alternative Genetic Pathways of Prostate Tumorigenesis
Cancer Res., September 15, 2007; 67(18): 8504 - 8510.
[Abstract] [Full Text] [PDF]

Home page
 Hum Mol GenetHome page
J. Davidsson, A. Andersson, K. Paulsson, M. Heidenblad, M. Isaksson, A. Borg, J. Heldrup, M. Behrendtz, I. Panagopoulos, T. Fioretos, et al.
Tiling resolution array comparative genomic hybridization, expression and methylation analyses of dup(1q) in Burkitt lymphomas and pediatric high hyperdiploid acute lymphoblastic leukemias reveal clustered near-centromeric breakpoints and overexpression of genes in 1q22-32.3
Hum. Mol. Genet., September 15, 2007; 16(18): 2215 - 2225.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
R. Diaz-Uriarte, A. Alibes, E. R. Morrissey, A. Canada, O. M. Rueda, and M. L. Neves
Asterias: integrated analysis of expression and aCGH data using an open-source, web-based, parallelized software suite
Nucleic Acids Res., July 13, 2007; 35(suppl_2): W75 - W80.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
J. Hu, J.-B. Gao, Y. Cao, E. Bottinger, and W. Zhang
Exploiting noise in array CGH data to improve detection of DNA copy number change
Nucleic Acids Res., March 12, 2007; 35(5): e35 - e35.
[Abstract] [Full Text] [PDF]

Home page
 Cancer Res.Home page
L. A. Meza-Zepeda, S. H. Kresse, A. H. Barragan-Polania, B. Bjerkehagen, H. O. Ohnstad, H. M. Namlos, J. Wang, B. E. Kristiansen, and O. Myklebost
Array Comparative Genomic Hybridization Reveals Distinct DNA Copy Number Differences between Gastrointestinal Stromal Tumors and Leiomyosarcomas.
Cancer Res., September 15, 2006; 66(18): 8984 - 8993.
[Abstract] [Full Text] [PDF]

Home page
 BioinformaticsHome page
W. R. Lai, M. D. Johnson, R. Kucherlapati, and P. J. Park
Comparative analysis of algorithms for identifying amplifications and deletions in array CGH data
Bioinformatics, October 1, 2005; 21(19): 3763 - 3770.
[Abstract] [Full Text] [PDF]

Home page
 BioinformaticsHome page
S. Y. Kim, S. W. Nam, S. H. Lee, W. S. Park, N. J. Yoo, J. Y. Lee, and Y.-J. Chung
ArrayCyGHt: a web application for analysis and visualization of array-CGH data
Bioinformatics, May 15, 2005; 21(10): 2554 - 2555.
[Abstract] [Full Text] [PDF]


Disclaimer:
Please note that abstracts for content published before 1996 were created through digital scanning and may therefore not exactly replicate the text of the original print issues. All efforts have been made to ensure accuracy, but the Publisher will not be held responsible for any remaining inaccuracies. If you require any further clarification, please contact our Customer Services Department.