Skip Navigation


Bioinformatics Advance Access originally published online on November 5, 2004
Bioinformatics 2005 21(6):835-836; doi:10.1093/bioinformatics/bti119
This Article
Right arrow Full Text Freely available
Right arrow FREE Full Text (Print PDF) Freely available
Right arrow All Versions of this Article:
21/6/835    most recent
bti119v1
Right arrow Comments: Submit a response
Right arrow Alert me when this article is cited
Right arrow Alert me when Comments are posted
Right arrow Alert me if a correction is posted
Services
Right arrow Email this article to a friend
Right arrow Similar articles in this journal
Right arrow Similar articles in ISI Web of Science
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Add to My Personal Archive
Right arrow Download to citation manager
Right arrow Search for citing articles in:
ISI Web of Science (14)
Right arrowRequest Permissions
Google Scholar
Right arrow Articles by Palaniswamy, S. K.
Right arrow Articles by Davuluri, R. V.
Right arrow Search for Related Content
PubMed
Right arrow PubMed Citation
Right arrow Articles by Palaniswamy, S. K.
Right arrow Articles by Davuluri, R. V.
Social Bookmarking
Add to CiteULike   Add to Connotea   Add to Del.icio.us  
What's this?

© The Author 2004. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions{at}oupjournals.org

OMGProm: a database of orthologous mammalian gene promoters

Saranyan K. Palaniswamy , Victor X. Jin , Hao Sun and Ramana V. Davuluri *

Human Cancer Genetics Program, Department of Molecular Virology, Immunology and Medical Genetics, Comprehensive Cancer Center, The Ohio State University Columbus, OH 43210, USA

*To whom correspondence should be addressed.

Summary: Sequence comparisons between human and rodents are increasingly being used for the identification of gene regulatory regions. The effectiveness of such an approach largely depends on the quality and availability of promoter sequences. We developed OMGProm by integrating three data sources: (1) experimentally supported full-length cDNA, promoter and first exon sequences; (2) homology information from HomoloGene and (3) the human and mouse genomic sequences. The current version of OMGProm contains 8550 promoter pairs of 6373 orthologous human and mouse genes, where supporting experimental evidence for transcription start site annotation exists in at least one species.

Availability: OMGProm can be accessed from http://bioinformatics.med.ohio-state.edu/OMGProm

Contact: davuluri-1{at}medctr.osu.edu

Supplementary information: Additional information on methods and implementation is available at http://bioinformatics.med.ohio-state.edu/OMGProm/si.jsp.


Add to CiteULike CiteULike   Add to Connotea Connotea   Add to Del.icio.us Del.icio.us    What's this?


This article has been cited by other articles:


Home page
 Genome ResHome page
V. X. Jin, H. O'Geen, S. Iyengar, R. Green, and P. J. Farnham
Identification of an OCT4 and SRY regulatory module using integrated computational and experimental genomics approaches
Genome Res., June 1, 2007; 17(6): 807 - 817.
[Abstract] [Full Text] [PDF]

Home page
 Mol. Cell. Biol.Home page
R. Kulshreshtha, M. Ferracin, S. E. Wojcik, R. Garzon, H. Alder, F. J. Agosto-Perez, R. Davuluri, C.-G. Liu, C. M. Croce, M. Negrini, et al.
A MicroRNA Signature of Hypoxia
Mol. Cell. Biol., March 1, 2007; 27(5): 1859 - 1867.
[Abstract] [Full Text] [PDF]

Home page
 Genome ResHome page
V. X. Jin, A. Rabinovich, S. L. Squazzo, R. Green, and P. J. Farnham
A computational genomics approach to identify cis-regulatory modules from chromatin immunoprecipitation microarray data--A case study using E2F1
Genome Res., December 1, 2006; 16(12): 1585 - 1595.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
C. D. Schmid, R. Perier, V. Praz, and P. Bucher
EPD in its twentieth year: towards complete promoter coverage of selected model organisms
Nucleic Acids Res., January 1, 2006; 34(suppl_1): D82 - D85.
[Abstract] [Full Text] [PDF]

Home page
 J Mol EndocrinolHome page
V X Jin, H Sun, T T Pohar, S Liyanarachchi, S K Palaniswamy, T H-M Huang, and R V Davuluri
ERTargetDB: an integral information resource of transcription regulation of estrogen receptor target genes
J. Mol. Endocrinol., October 1, 2005; 35(2): 225 - 230.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
D. L. Corcoran, E. Feingold, and P. V. Benos
FOOTER: a web tool for finding mammalian DNA regulatory regions using phylogenetic footprinting
Nucleic Acids Res., July 1, 2005; 33(suppl_2): W442 - W446.
[Abstract] [Full Text] [PDF]


Disclaimer: Please note that abstracts for content published before 1996 were created through digital scanning and may therefore not exactly replicate the text of the original print issues. All efforts have been made to ensure accuracy, but the Publisher will not be held responsible for any remaining inaccuracies. If you require any further clarification, please contact our Customer Services Department.