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Bioinformatics Advance Access originally published online on November 30, 2004
Bioinformatics 2005 21(7):1265-1266; doi:10.1093/bioinformatics/bti122
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© The Author 2004. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions{at}oupjournals.org

MapLinker: a software tool that aids physical map-linked whole genome shotgun assembly

Jian Xu * and Jeffrey I. Gordon *

Center for Genome Sciences and Department of Molecular Biology and Pharmacology, Washington University School of Medicine St. Louis, MO 63108, USA

*To whom correspondence should be addressed.

Summary: MapLinker is an analysis tool, as well as a browsing interface, that facilitates integration of whole genome sequence assembly with a clone-based physical map. Using the locations of sequence markers on the physical map, MapLinker generates a tentative sequence map of the genome that serves to verify the map and to guide genome-wide finishing.

Availability: MapLinker is freely available at http://gordonlab.wustl.edu/MapLinker

Contact: jgordon{at}molecool.wustl.edu, jxu{at}watson.wustl.edu


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