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Bioinformatics Advance Access originally published online on November 16, 2004
Bioinformatics 2005 21(7):1282-1283; doi:10.1093/bioinformatics/bti146
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© The Author 2004. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions{at}oupjournals.org

CyDAS: a cytogenetic data analysis system

Bernhard Hiller 1, Jutta Bradtke 1, Harald Balz 1 and Harald Rieder 1,2,*

1Institut für Klinische Genetik der Phillipps-Universität Marburg Bahnhofstrasse 7, 35037 Marburg, Germany
2Institut für Humangenetik und Anthropologie, Universitätsklinikum Düsseldorf, Universitätsstrasse 1 40225 Düsseldorf, Germany

*To whom correspondence should be addressed.

For statistical analyses in cancer cytogenetics, the genomic changes encoded by the karyotype must be translated into numerical codes. We developed a program, which extracts chromosomal gains and losses as well as breakpoints from the karyotype. The changes are compiled in tables according to the chromosome bands involved and/or depicted in projection to the respective chromosome ideogram. The data are ready to be integrated into further statistical analyses. The program may be run as desktop or Internet application.

Availability: http://www.cydas.org/

Contact: info{at}cydas.org


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