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Bioinformatics Advance Access originally published online on September 17, 2004
Bioinformatics 2005 21(8):1730-1732; doi:10.1093/bioinformatics/bth488
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© The Author 2004. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions{at}oupjournals.org

HaploPainter: a tool for drawing pedigrees with complex haplotypes

Holger Thiele 1,3,* and Peter Nürnberg 1,2,3

1Gene Mapping Center, Max Delbrueck Center (MDC) for Molecular Medicine Berlin-Buch, Germany
2Institute of Medical Genetics, Charité—University Medicine of Berlin Berlin, Germany
3Cologne Center for Genomics (CCG), University of Cologne Germany

*To whom correspondence should be addressed.

Summary: HaploPainter is a user-friendly pedigree-drawing application with special features for easy visualization of complex haplotype information. It has been developed to facilitate gene mapping in Mendelian diseases in terms of fast and reliable definition of the smallest critical interval harbouring the underlying gene defect. HaploPainter is written in Perl and may be used for visualization of haplotypes calculated by any of the common linkage programs. With special features like haplotype compression or the ability of marker section cut-out it particularly addresses the requirements for viewing large haplotypes as obtained by using for genome scans high-density marker panels of many thousands of single nucleotide polymorphisms (SNPs).

Availability: http://haplopainter.sourceforge.net/

Contact: holger.thiele{at}uni-koeln.de


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