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Bioinformatics 2005 21(Suppl 2):ii40-ii41; doi:10.1093/bioinformatics/bti1106
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© The Author 2005. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions{at}oxfordjournals.org

Adding Some SPICE to DAS

Andreas Prlic *, Thomas A. Down and Tim J. P. Hubbard

Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus Hinxton, Cambridge CB10 1SA, UK

*To whom correspondence should be addressed.

Summary: The distributed annotation system (DAS) defines a communication protocol used to exchange biological annotations. It is motivated by the idea that annotations should not be provided by single centralized databases but instead be spread over multiple sites. Data distribution, performed by DAS servers, is separated from visualization, which is carried out by DAS clients. The original DAS protocol was designed to serve annotation of genomic sequences. We have extended the protocol to be applicable to macromolecular structures. Here we present SPICE, a new DAS client that can be used to visualize protein sequence and structure annotations.

Availability: http://www.efamily.org.uk/software/dasclients/spice/

Contact: ap3{at}sanger.ac.uk


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