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Bioinformatics Advance Access originally published online on April 27, 2006
Bioinformatics 2006 22(13):1656-1657; doi:10.1093/bioinformatics/btl157
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© The Author 2006. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oxfordjournals.org

Evolutionary trace report_maker: a new type of service for comparative analysis of proteins

I. Mihalek *, I. Res and O. Lichtarge

Department of Molecular and Human Genetics, Baylor College of Medicine One Baylor Plaza, Houston, TX 77030, USA

*To whom correspondence should be addressed.

Summary: Evolutionary trace report_maker offers a new type of service for researchers investigating the function of novel proteins. It pools, from different sources, information about protein sequence, structure and elementary annotation, and to that background superimposes inference about the evolutionary behavior of individual residues, using real-valued evolutionary trace method. As its only input it takes a Protein Data Bank identifier or UniProt accession number, and returns a human-readable document in PDF format, supplemented by the original data needed to reproduce the results quoted in the report.

Availability: Evolutionary trace reports are freely available for academic users at http://mammoth.bcm.tmc.edu/report-maker

Contact: {imihalek,ires,lichtarge}@bcm.tmc.edu

Received on March 7, 2006; revised on April 4, 2006; accepted on April 20, 2006

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R. Matthew Ward, E. Venner, B. Daines, S. Murray, S. Erdin, D. M. Kristensen, and O. Lichtarge
Evolutionary Trace Annotation Server: automated enzyme function prediction in protein structures using 3D templates
Bioinformatics, June 1, 2009; 25(11): 1426 - 1427.
[Abstract] [Full Text] [PDF]


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