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Bioinformatics 2006 22(14):e158-e165; doi:10.1093/bioinformatics/btl201
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© The Author 2006. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oxfordjournals.org
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Bistable switching and excitable behaviour in the activation of Src at mitosis

Hendrik Fuß *, Werner Dubitzky , Stephen Downes and Mary Jo Kurth

University of Ulster, School of Biomedical Sciences Cromore Road, Coleraine, BT52 1SA, Northern Ireland

*To whom correspondence should be addressed.

Motivation: The protein tyrosine kinase Src is involved in a multitude of biochemical pathways and cellular functions. A complex network of interactions with other kinases and phosphatases obscures its precise mode of operation.

Results: We have constructed a semi-quantitative computational dynamic systems model of the activation of Src at mitosis based on protein interactions described in the literature. Through numerical simulation and bifurcation analysis we show that Src regulation involves a bistable switch, a pattern increasingly recognised as essential to biochemical signalling. The switch is operated by the tyrosine kinase CSK, which itself is involved in a negative feedback loop with Src. Negative feedback generates an excitable system, which produces transient activation of Src. One of the system parameters, which is linked to the cyclin dependent kinase cdc2, controls excitability via a second bistable switch. This topology allows for differentiated responses to a multitude of signals. The model offers explanations for the existence of the positive and negative feedback loops involving protein tyrosine phosphatase alpha (PTP{alpha}) and translocation of CSK and predicts a specific relationship between Src phosphorylation and activity.

Contact: fuss-h{at}ulster.ac.uk


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