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Bioinformatics Advance Access originally published online on June 29, 2006
Bioinformatics 2006 22(16):2049-2050; doi:10.1093/bioinformatics/btl285
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© The Author 2006. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oxfordjournals.org

ET viewer: an application for predicting and visualizing functional sites in protein structures

Daniel H. Morgan 1,3, David M. Kristensen 1,3, David Mittelman 2,3 and Olivier Lichtarge 1,3,*

1 Department of Molecular and Human Genetics, One Baylor Plaza Houston, TX 77030, USA
2 Department of Biochemistry, One Baylor Plaza Houston, TX 77030, USA
3 Program in Structural and Computational Biology and Molecular Biophysics, One Baylor Plaza Houston, TX 77030, USA

*To whom correspondence should be addressed.


  Abstract

Summary: The Evolutionary Trace Viewer (ETV) provides a one-stop environment in which to run, visualize and interpret Evolutionary Trace (ET) predictions of functional sites in protein structures. ETV is implemented using Java to run across different operating systems using Java Web Start technology.

Availability: The ETV is available for download from our website at http://mammoth.bcm.tmc.edu/traceview/index.html. This webpage also links to sample trace results and a user manual that describes ET Viewer functions in detail.

Contact: lichtarge{at}bcm.edu

Associate Editor: Dmitrij Frishman

Received on April 25, 2006; accepted on May 31, 2006

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