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Bioinformatics Advance Access originally published online on December 6, 2005
Bioinformatics 2006 22(3):354-355; doi:10.1093/bioinformatics/bti807
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© The Author 2005. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oxfordjournals.org

DNAVis: interactive visualization of comparative genome annotations

Mark W. E. J. Fiers 1, Huub van de Wetering 2, Tim H. J. M. Peeters 2, Jarke J. van Wijk 2 and Jan-Peter Nap 1,3,*

1Applied Bioinformatics, Plant Research International, Wageningen University and Research Centre Wageningen, The Netherlands
2Department of Mathematics and Computer Science, Technische Universiteit Eindhoven Eindhoven, The Netherlands
3Centre for BioSystems Genomics, Wageningen The Netherlands

*To whom correspondence should be addressed.

Summary: The software package DNAVis offers a fast, interactive and real-time visualization of DNA sequences and their comparative genome annotations. DNAVis implements advanced methods of information visualization such as linked views, perspective walls and semantic zooming, in addition to the display of heterologous data in dot plot-like matrix views.

Availability: The software is freely available at www.win.tue.nl/dnavis; the source code is available upon request.

Contact: janpeter.nap{at}wur.nl

Supplementary information: Figures are available at Bioinformatics online; documentation and data are available at www.win.tue.nl/dnavis

Received on October 9, 2005; revised on November 27, 2005; accepted on November 28, 2005

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