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Bioinformatics Advance Access originally published online on December 1, 2005
Bioinformatics 2006 22(3):363-364; doi:10.1093/bioinformatics/bti798
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© The Author 2005. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oxfordjournals.org

apTreeshape: statistical analysis of phylogenetic tree shape

Nicolas Bortolussi , Eric Durand , Michael Blum and Olivier François *

Team of Mathematical Biology (TIMB), TIMC, Faculty of Medicine F38706 La Tronche, France

*To whom correspondence should be adderessed.

Summary: apTreeshape is a R package dedicated to simulation and analysis of phylogenetic tree topologies using statistical imbalance measures. It is a companion library of the R package ‘ape’, which provides additional functions for reading, plotting, manipulating phylogenetic trees and for connecting to public phylogenetic tree databases. One strength of the package is to include appropriate corrections of classical shape statistics as well as new tests based on the statistical theory of likelihood ratios.

Availability: http://cran.r-project.org

Contact: Olivier.Francois{at}imag.fr

Received on September 14, 2005; revised on November 21, 2005; accepted on November 22, 2005

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