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Bioinformatics Advance Access originally published online on January 12, 2006
Bioinformatics 2006 22(5):628-629; doi:10.1093/bioinformatics/btk042
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© The Author 2006. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oxfordjournals.org

Tools for the SBML Community

Colin S. Gillespie 1,*, Darren J. Wilkinson 1, Carole J. Proctor 2, Daryl P. Shanley 2, Richard J. Boys 1 and Thomas B. L. Kirkwood 2

1School of Mathematics and Statistics, University of Newcastle Newcastle upon Tyne, NE1 7RU, UK
2Henry Wellcome Laboratory for Biogerontology Research, School of Clinical and Medical Sciences, Gerontology, University of Newcastle Newcastle upon Tyne, NE4 6BE, UK

*To whom correspondence should be addressed.

Motivation: SBML is quickly becoming the standard format to exchange biochemical models. The tools presented in this paper are loosely-coupled, and are intended to be incorporated into SBML aware applications. The rationale for this is to reduce the amount of repeated work carried out within the community and to create tools that offer a greater number of features to the end-user.

Availability: All tools described are available from http://www.basis.ncl.ac.uk/software and are licensed under GNU General Public License.

Contact: c.gillespie{at}ncl.ac.uk

Received on September 22, 2005; revised on December 7, 2005; accepted on January 4, 2006

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