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Bioinformatics Advance Access originally published online on March 30, 2007
Bioinformatics 2007 23(12):1559-1561; doi:10.1093/bioinformatics/btm126
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© The Author 2007. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oxfordjournals.org

SCEPTRANS: an online tool for analyzing periodic transcription in yeast

Andrzej Kudlicki , Maga Rowicka and Zbyszek Otwinowski *

University of Texas Southwestern Medical Center, Department of Biochemistry, 5323 Harry Hines Blvd. Dallas, TX 75390-8816, USA

*To whom correspondence should be addressed.


  Abstract

Summary: SCEPTRANS is designed for analysis of microarray timecourse data related to periodic phenomena in the budding yeast. The server allows for easy viewing of temporal profiles of multiple genes in a number of datasets. Additional functionality includes searching for coexpressed genes, periodicity and correlation analysis, integrating functional annotation and localization data as well as advanced operations on sets of genes.

Availability: Available online at http://sceptrans.org/

Contact: andrzej{at}work.swmed.edu

Supplementary information: Supplementary data are available at Bioinformatics online.

Associate Editor: Chris Stoeckert

Received on March 2, 2007; revised on March 22, 2007; accepted on March 24, 2007

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