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Bioinformatics Advance Access originally published online on April 26, 2007
Bioinformatics 2007 23(13):1683-1685; doi:10.1093/bioinformatics/btm157
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© The Author 2007. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oxfordjournals.org

SciRoKo: a new tool for whole genome microsatellite search and investigation

Robert Kofler 1,*, Christian Schlötterer 2,3 and Tamas Lelley 1

1University of Natural Resources and Applied Life Sciences, Department for Agrobiotechnology IFA-Tulln, Institute of Biotechnology in Plant Production, Konrad Lonrenz Straße 20, 3430 Tulln, 2Institut für Ökologie, Universität Innsbruck, Technikerstraße 25, 6020 Innsbruck, Austria and 3Institut für Tierzucht and Genetik, Veterinärmedizinische Universitat Wien, Josef Baumann Gasse 1, 1210 Wien, Austria

*To whom correspondence should be addressed.


  Abstract

Summary: SciRoKo is a user-friendly software tool for the identification of microsatellites in genomic sequences. The combination of an extremely fast search algorithm with a built-in summary statistic tool makes SciRoKo an excellent tool for full genome analysis. Compared to other already existing tools, SciRoKo also allows the analysis of compound microsatellites.

Availability: free for use: www.kofler.or.at/Bioinformatics

Contact: robert.kofler{at}boku.ac.at

Supplementary information: Supplementary data are available at Bioinformatics online.

Associate Editor: Alex Bateman

Received on February 22, 2007; revised on April 12, 2007; accepted on April 17, 2007

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