Skip Navigation


Bioinformatics Advance Access originally published online on June 22, 2007
Bioinformatics 2007 23(16):2155-2162; doi:10.1093/bioinformatics/btm313
This Article
Right arrow Full Text Freely available
Right arrow FREE Full Text (Print PDF) Freely available
Right arrow All Versions of this Article:
23/16/2155    most recent
btm313v1
Right arrow Comments: Submit a response
Right arrow Alert me when this article is cited
Right arrow Alert me when Comments are posted
Right arrow Alert me if a correction is posted
Services
Right arrow Email this article to a friend
Right arrow Similar articles in this journal
Right arrow Similar articles in ISI Web of Science
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Add to My Personal Archive
Right arrow Download to citation manager
Right arrow Search for citing articles in:
ISI Web of Science (2)
Right arrowRequest Permissions
Google Scholar
Right arrow Articles by Kim, K.-W.
Right arrow Articles by Park, Y.-J.
Right arrow Search for Related Content
PubMed
Right arrow PubMed Citation
Right arrow Articles by Kim, K.-W.
Right arrow Articles by Park, Y.-J.
Social Bookmarking
Add to CiteULike   Add to Connotea   Add to Del.icio.us  
What's this?

© The Author 2007. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oxfordjournals.org

PowerCore: a program applying the advanced M strategy with a heuristic search for establishing core sets

Kyu-Won Kim 1,2,{dagger}, Hun-Ki Chung 1,{dagger}, Gyu-Taek Cho 1, Kyung-Ho Ma 1, Dorothy Chandrabalan 3, Jae-Gyun Gwag 1, Tae-San Kim 1, Eun-Gi Cho 1 and Yong-Jin Park 1,3,*

1National Institute of Agricultural Biotechnology, 247 Seodun-dong, Suwon, 441-707, 2Qubesoft,R/No, Dongyoung Central B/D, 847-2 Geumjeong-dong, Gunpo 434-050, R.Korea and 3Bioversity International, APO Office, Serdang 43400, Malaysia

*To whom correspondence should be addressed.


  Abstract

Motivation: Core sets are necessary to ensure that access to useful alleles or characteristics retained in genebanks is guaranteed. We have successfully developed a computational tool named ‘PowerCore’ that aims to support the development of core sets by reducing the redundancy of useful alleles and thus enhancing their richness.

Results: The program, using a new approach completely different from any other previous methodologies, selects entries of core sets by the advanced M (maximization) strategy implemented through a modified heuristic algorithm. The developed core set has been validated to retain all characteristics for qualitative traits and all classes for quantitative ones. PowerCore effectively selected the accessions with higher diversity representing the entire coverage of variables and gave a 100% reproducible list of entries whenever repeated.

Availability: PowerCore software uses the .NET Framework Version 1.1 environment which is freely available for the MS Windows platform. The files can be downloaded from http://genebank.rda.go.kr/powercore/. The distribution of the package includes executable programs, sample data and a user manual.

Contact: yjpark{at}rda.go.kr

Associate Editor: Alfonso Valencia

{dagger}The authors wish it to be known that, in their opinion, the first two authors should be regarded as joint First Authors.

Received on February 28, 2007; revised on May 24, 2007; accepted on June 5, 2007

Add to CiteULike CiteULike   Add to Connotea Connotea   Add to Del.icio.us Del.icio.us    What's this?


This article has been cited by other articles:


Home page
 Crop Sci.Home page
H. A. Agrama, W. Yan, F. Lee, R. Fjellstrom, M.-H. Chen, M. Jia, and A. McClung
Genetic Assessment of a Mini-Core Subset Developed from the USDA Rice Genebank
Crop Sci., June 26, 2009; 49(4): 1336 - 1346.
[Abstract] [Full Text] [PDF]


Disclaimer: Please note that abstracts for content published before 1996 were created through digital scanning and may therefore not exactly replicate the text of the original print issues. All efforts have been made to ensure accuracy, but the Publisher will not be held responsible for any remaining inaccuracies. If you require any further clarification, please contact our Customer Services Department.