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Bioinformatics Advance Access originally published online on June 5, 2007
Bioinformatics 2007 23(16):2178-2179; doi:10.1093/bioinformatics/btm293
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© The Author 2007. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oxfordjournals.org

Alvira: comparative genomics of viral strains

François Enault 1,*,{dagger}, Romain Fremez 1, Eric Baranowski 2 and Thomas Faraut 1

1Laboratoire de Génétique Cellulaire INRA UMR444, Chemin de Borde Rouge BP52627 31326 Castanet Tolosan Cedex and 2Laboratoire des Interactions Hotes-Agents Pathogènes ENVT UMR1225, 23 chemin des Capelles 31000 Toulouse, France

*To whom correspondence should be addressed.


  Abstract

Motivation: The Alvira tool is a general purpose multiple sequence alignment viewer with a special emphasis on the comparative analysis of viral genomes. This new tool has been devised specifically to address the problem of the simultaneous analysis of a large number of viral strains. The multiple alignment is embedded in a graph that can be explored at different levels of resolution.

Availability: The Alvira software is available at: http://bioinfo.genopole-toulouse.prd.fr/Alvira

Contact: fenault{at}toulouse.inra.fr

Supplementary information: A tutorial is available at Alvira's homepage.

Associate Editor: Chris Stoeckert

{dagger}The authors wish it to be known that, in their opinion, the first two authors should be regarded as joint First Authors.

Received on March 21, 2007; revised on May 18, 2007; accepted on May 23, 2007

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