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Bioinformatics Advance Access originally published online on June 22, 2007
Bioinformatics 2007 23(17):2339-2341; doi:10.1093/bioinformatics/btm321
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© The Author 2007. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oxfordjournals.org

MAnGO: an interactive R-based tool for two-colour microarray analysis

Laetitia Marisa 1, Jean-Laurent Ichanté 1, Nancie Reymond 1,2,*, Lawrence Aggerbeck 1, Hervé Delacroix 1,2 and Marie-Hélène Mucchielli-Giorgi 1,3

1Centre de Génétique Moléculaire, CNRS UPR2167 and Gif/Orsay DNA Microarray Platform (GODMAP), 91190 Gif-sur-Yvette, 2Univ Paris-Sud 11, 91405 Orsay and 3Univ Pierre and Marie Curie, 75005 Paris, France

*To whom correspondence should be addressed.


  Abstract

Summary: MAnGO (Microarray Analysis at the Gif/Orsay platform) is an interactive R-based tool for the analysis of two-colour microarray experiments. It is a compilation of various methods, which allows the user (1) to control data quality by detecting biases with a large number of visual representations, (2) to pre-process data (filtering and normalization) and (3) to carry out differential analyses. MAnGO is not only a ‘turn-key’ tool, oriented towards biologists but also a flexible and adaptable R script oriented towards bioinformaticians.

Availability: http://bioinfome.cgm.cnrs-gif.fr/

Contact: reymond{at}cgm.cnrs-gif.fr

Associate Editor: David Rocke

Received on April 15, 2007; revised on June 5, 2007; accepted on June 8, 2007

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