Bioinformatics Advance Access originally published online on September 10, 2007
Bioinformatics 2007 23(21):2947-2948; doi:10.1093/bioinformatics/btm404
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Clustal W and Clustal X version 2.0
1The Conway Institute of Biomolecular and Biomedical Research, University College Dublin, Belfield, Dublin 4, Ireland, 2Laboratoire de Biologie et Genomique Structurales, Institut de Génétique et de Biologie Moléculaire et Cellulaire, Illkirch, France, 3European Molecular Biology Laboratory, Meyerhofstrasse 1, 69117 Heidelberg, Germany and 4EMBL Outstation-European Bioinformatics Institute, Wellcome Trust Genome Campus Hinxton, Cambridge, CB10 1SD, UK
*To whom correspondence should be addressed.
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Abstract |
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Summary: The Clustal W and Clustal X multiple sequence alignment programs have been completely rewritten in C++. This will facilitate the further development of the alignment algorithms in the future and has allowed proper porting of the programs to the latest versions of Linux, Macintosh and Windows operating systems.
Availability: The programs can be run on-line from the EBI web server: http://www.ebi.ac.uk/tools/clustalw2. The source code and executables for Windows, Linux and Macintosh computers are available from the EBI ftp site ftp://ftp.ebi.ac.uk/pub/software/clustalw2/
Contact: clustalw{at}ucd.ie
Associate Editor: Alex Bateman
Received on June 27, 2007; revised on August 3, 2007; accepted on August 3, 2007
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 S. J. Schatzberg, Q. Li, B. F. Porter, R. M. Barber, M. K. Claiborne, J. M. Levine, G. J. Levine, S. K. Israel, B. D. Young, M. Kiupel, et al. Broadly reactive pan-paramyxovirus reverse transcription polymerase chain reaction and sequence analysis for the detection of Canine distemper virus in a case of canine meningoencephalitis of unknown etiology J Vet Diagn Invest, November 1, 2009; 21(6): 844 - 849. [Abstract] [Full Text] [PDF]
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 M. D. Wilkerson, Y. Ru, and V. P. Brendel Common introns within orthologous genes: software and application to plants Brief Bioinform, November 1, 2009; 10(6): 631 - 644. [Abstract] [Full Text] [PDF]
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M. Sakamoto, N. Suzuki, N. Matsunaga, K. Koshihara, M. Seki, H. Komiya, and Y. Benno Parabacteroides gordonii sp. nov., isolated from human blood cultures Int J Syst Evol Microbiol, November 1, 2009; 59(11): 2843 - 2847. [Abstract] [Full Text] [PDF]
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 L. Chen, J. R. Mediavilla, D. C. Oliveira, B. M. Willey, H. de Lencastre, and B. N. Kreiswirth Multiplex Real-Time PCR for Rapid Staphylococcal Cassette Chromosome mec Typing J. Clin. Microbiol., November 1, 2009; 47(11): 3692 - 3706. [Abstract] [Full Text] [PDF]
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M. Rho and H. Tang MGEScan-non-LTR: computational identification and classification of autonomous non-LTR retrotransposons in eukaryotic genomes Nucleic Acids Res., November 1, 2009; 37(21): e143 - e143. [Abstract] [Full Text] [PDF]
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G. W. Wilson and D. R. Edgell Phage T4 mobE promotes trans homing of the defunct homing endonuclease I-TevIII Nucleic Acids Res., November 1, 2009; 37(21): 7110 - 7123. [Abstract] [Full Text] [PDF]
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R. M. Smith, J. Josephsen, and M. D. Szczelkun An Mrr-family nuclease motif in the single polypeptide restriction-modification enzyme LlaGI Nucleic Acids Res., November 1, 2009; 37(21): 7231 - 7238. [Abstract] [Full Text] [PDF]
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C. S. Mahon, A. J. O'Donoghue, D. H. Goetz, P. G. Murray, C. S. Craik, and M. G. Tuohy Characterization of a multimeric, eukaryotic prolyl aminopeptidase: an inducible and highly specific intracellular peptidase from the non-pathogenic fungus Talaromyces emersonii Microbiology, November 1, 2009; 155(11): 3673 - 3682. [Abstract] [Full Text] [PDF]
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K. Schirner and J. Errington Influence of heterologous MreB proteins on cell morphology of Bacillus subtilis Microbiology, November 1, 2009; 155(11): 3611 - 3621. [Abstract] [Full Text] [PDF]
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Y. Sun, F. Xue, Y. Guo, M. Ma, N. Hao, X. C. Zhang, Z. Lou, X. Li, and Z. Rao Crystal Structure of Porcine Reproductive and Respiratory Syndrome Virus Leader Protease Nsp1{alpha} J. Virol., November 1, 2009; 83(21): 10931 - 10940. [Abstract] [Full Text] [PDF]
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 C. L. Elderkin Intragenomic variation in the rDNA internal transcribed spacer (ITS1) in the freshwater mussel Cumberlandia monodonta (Say, 1828) J. Mollus. Stud., November 1, 2009; 75(4): 419 - 421. [Full Text] [PDF]
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S. K. A. Natesan, J. A. Sullivan, and J. C. Gray Myosin XI Is Required for Actin-Associated Movement of Plastid Stromules Mol Plant, November 1, 2009; 2(6): 1262 - 1272. [Abstract] [Full Text] [PDF]
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K. Livingstone and S. Anderson Patterns of Variation in the Evolution of Carotenoid Biosynthetic Pathway Enzymes of Higher Plants J. Hered., November 1, 2009; 100(6): 754 - 761. [Abstract] [Full Text] [PDF]
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K. Bouwmeester and F. Govers Arabidopsis L-type lectin receptor kinases: phylogeny, classification, and expression profiles J. Exp. Bot., November 1, 2009; 60(15): 4383 - 4396. [Abstract] [Full Text] [PDF]
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 R. Khanna, B. Kronmiller, D. R. Maszle, G. Coupland, M. Holm, T. Mizuno, and S.-H. Wu The Arabidopsis B-Box Zinc Finger Family PLANT CELL, November 1, 2009; 21(11): 3416 - 3420. [Full Text] [PDF]
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G. Bannenberg, M. Martinez, M. J. Rodriguez, M. A. Lopez, I. Ponce de Leon, M. Hamberg, and C. Castresana Functional Analysis of {alpha}-DOX2, an Active {alpha}-Dioxygenase Critical for Normal Development in Tomato Plants Plant Physiology, November 1, 2009; 151(3): 1421 - 1432. [Abstract] [Full Text] [PDF]
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Y. Nishiyama, S. Planque, Y. Mitsuda, G. Nitti, H. Taguchi, L. Jin, J. Symersky, S. Boivin, M. Sienczyk, M. Salas, et al. Toward Effective HIV Vaccination: INDUCTION OF BINARY EPITOPE REACTIVE ANTIBODIES WITH BROAD HIV NEUTRALIZING ACTIVITY J. Biol. Chem., October 30, 2009; 284(44): 30627 - 30642. [Abstract] [Full Text] [PDF]
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L. A. Martin-Visscher, X. Gong, M. Duszyk, and J. C. Vederas The Three-dimensional Structure of Carnocyclin A Reveals That Many Circular Bacteriocins Share a Common Structural Motif J. Biol. Chem., October 16, 2009; 284(42): 28674 - 28681. [Abstract] [Full Text] [PDF]
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