Bioinformatics Advance Access originally published online on September 10, 2007
Bioinformatics 2007 23(21):2947-2948; doi:10.1093/bioinformatics/btm404
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Clustal W and Clustal X version 2.0
1The Conway Institute of Biomolecular and Biomedical Research, University College Dublin, Belfield, Dublin 4, Ireland, 2Laboratoire de Biologie et Genomique Structurales, Institut de Génétique et de Biologie Moléculaire et Cellulaire, Illkirch, France, 3European Molecular Biology Laboratory, Meyerhofstrasse 1, 69117 Heidelberg, Germany and 4EMBL Outstation-European Bioinformatics Institute, Wellcome Trust Genome Campus Hinxton, Cambridge, CB10 1SD, UK
*To whom correspondence should be addressed.
 |
Abstract |
|---|
Summary: The Clustal W and Clustal X multiple sequence alignment programs have been completely rewritten in C++. This will facilitate the further development of the alignment algorithms in the future and has allowed proper porting of the programs to the latest versions of Linux, Macintosh and Windows operating systems.
Availability: The programs can be run on-line from the EBI web server: http://www.ebi.ac.uk/tools/clustalw2. The source code and executables for Windows, Linux and Macintosh computers are available from the EBI ftp site ftp://ftp.ebi.ac.uk/pub/software/clustalw2/
Contact: clustalw{at}ucd.ie
Associate Editor: Alex Bateman
Received on June 27, 2007; revised on August 3, 2007; accepted on August 3, 2007
CiteULike 
Connotea 
Del.icio.us What's this?
This article has been cited by other articles:
|
|
 |
|
  J. Feldmann, A. Leligdowicz, A. Jaye, T. Dong, H. Whittle, and S. L. Rowland-Jones Downregulation of the T-Cell Receptor by Human Immunodeficiency Virus Type 2 Nef Does Not Protect against Disease Progression J. Virol., December 15, 2009; 83(24): 12968 - 12972. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 V. Dhote, A. L. Starosta, D. N. Wilson, and K. A. Reynolds The Final Step of Hygromycin A Biosynthesis, Oxidation of C-5''-Dihydrohygromycin A, Is Linked to a Putative Proton Gradient-Dependent Efflux Antimicrob. Agents Chemother., December 1, 2009; 53(12): 5163 - 5172. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 R. P Quinn, S. J Mahoney, B. M Wilkinson, D. J Thornton, and C. J Stirling A novel role for Gtb1p in glucose trimming of N-linked glycans Glycobiology, December 1, 2009; 19(12): 1408 - 1416. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 S. E. Degn, A. G. Hansen, R. Steffensen, C. Jacobsen, J. C. Jensenius, and S. Thiel MAp44, a Human Protein Associated with Pattern Recognition Molecules of the Complement System and Regulating the Lectin Pathway of Complement Activation J. Immunol., December 1, 2009; 183(11): 7371 - 7378. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 M. W. Brown, F. W. Spiegel, and J. D. Silberman Phylogeny of the "Forgotten" Cellular Slime Mold, Fonticula alba, Reveals a Key Evolutionary Branch within Opisthokonta Mol. Biol. Evol., December 1, 2009; 26(12): 2699 - 2709. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. Marz, A. Donath, N. Verstraete, V. T. Nguyen, P. F. Stadler, and O. Bensaude Evolution of 7SK RNA and Its Protein Partners in Metazoa Mol. Biol. Evol., December 1, 2009; 26(12): 2821 - 2830. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
K. Mukherjee, L. Brocchieri, and T. R. Burglin A Comprehensive Classification and Evolutionary Analysis of Plant Homeobox Genes Mol. Biol. Evol., December 1, 2009; 26(12): 2775 - 2794. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
C. D. Hirsch, Y. Wu, H. Yan, and J. Jiang Lineage-Specific Adaptive Evolution of the Centromeric Protein CENH3 in Diploid and Allotetraploid Oryza Species Mol. Biol. Evol., December 1, 2009; 26(12): 2877 - 2885. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 J. Lee, J. Johnson, Z. Ding, M. Paetzel, and R. B. Cornell Crystal Structure of a Mammalian CTP: Phosphocholine Cytidylyltransferase Catalytic Domain Reveals Novel Active Site Residues within a Highly Conserved Nucleotidyltransferase Fold J. Biol. Chem., November 27, 2009; 284(48): 33535 - 33548. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 C. Du, N. Fefelova, J. Caronna, L. He, and H. K. Dooner The polychromatic Helitron landscape of the maize genome PNAS, November 24, 2009; 106(47): 19916 - 19921. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
B. P. Hudson, J. Quispe, S. Lara-Gonzalez, Y. Kim, H. M. Berman, E. Arnold, R. H. Ebright, and C. L. Lawson Three-dimensional EM structure of an intact activator-dependent transcription initiation complex PNAS, November 24, 2009; 106(47): 19830 - 19835. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 J. L. Koop, D. W. Zeh, M. M. Bonilla, and J. A. Zeh Reproductive compensation favours male-killing Wolbachia in a live-bearing host Proc R Soc B, November 22, 2009; 276(1675): 4021 - 4028. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
Z. T. Campbell and T. O. Baldwin Two Lysine Residues in the Bacterial Luciferase Mobile Loop Stabilize Reaction Intermediates J. Biol. Chem., November 20, 2009; 284(47): 32827 - 32834. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 J. R. Shak, J. J. Dick, R. J. Meinersmann, G. I. Perez-Perez, and M. J. Blaser Repeat-Associated Plasticity in the Helicobacter pylori RD Gene Family J. Bacteriol., November 15, 2009; 191(22): 6900 - 6910. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 P. Kahlem and S. J. Newfeld Informatics approaches to understanding TGF{beta} pathway regulation Development, November 15, 2009; 136(22): 3729 - 3740. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 R. Nachat, S. Cipolat, L. M. Sevilla, M. Chhatriwala, K. R. Groot, and F. M. Watt KazrinE is a desmosome-associated liprin that colocalises with acetylated microtubules J. Cell Sci., November 15, 2009; 122(22): 4035 - 4041. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. Baud'huin, L. Duplomb, S. Teletchea, C. Charrier, M. Maillasson, M. Fouassier, and D. Heymann Factor VIII-von Willebrand Factor Complex Inhibits Osteoclastogenesis and Controls Cell Survival J. Biol. Chem., November 13, 2009; 284(46): 31704 - 31713. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. M. O. Pena, S. P. Melo, Y.-Y. Xing, K. White, K. W. Barbour, and F. G. Berger The Intrinsically Disordered N-terminal Domain of Thymidylate Synthase Targets the Enzyme to the Ubiquitin-independent Proteasomal Degradation Pathway J. Biol. Chem., November 13, 2009; 284(46): 31597 - 31607. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 L. Klucar, M. Stano, and M. Hajduk phiSITE: database of gene regulation in bacteriophages Nucleic Acids Res., November 9, 2009; (2009) gkp911v1. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 L. C. Devitt, K. Fanning, R. G. Dietzgen, and T. A. Holton Isolation and functional characterization of a lycopene {beta}-cyclase gene that controls fruit colour of papaya (Carica papaya L.) J. Exp. Bot., November 3, 2009; (2009) erp284v1. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
S. J. Maerkl and S. R. Quake Experimental determination of the evolvability of a transcription factor PNAS, November 3, 2009; 106(44): 18650 - 18655. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 N. R. Stevens, J. Dobbelaere, A. Wainman, F. Gergely, and J. W. Raff Ana3 is a conserved protein required for the structural integrity of centrioles and basal bodies J. Cell Biol., November 2, 2009; 187(3): 355 - 363. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 S. J. Schatzberg, Q. Li, B. F. Porter, R. M. Barber, M. K. Claiborne, J. M. Levine, G. J. Levine, S. K. Israel, B. D. Young, M. Kiupel, et al. Broadly reactive pan-paramyxovirus reverse transcription polymerase chain reaction and sequence analysis for the detection of Canine distemper virus in a case of canine meningoencephalitis of unknown etiology J Vet Diagn Invest, November 1, 2009; 21(6): 844 - 849. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 M. D. Wilkerson, Y. Ru, and V. P. Brendel Common introns within orthologous genes: software and application to plants Brief Bioinform, November 1, 2009; 10(6): 631 - 644. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 M. Sakamoto, N. Suzuki, N. Matsunaga, K. Koshihara, M. Seki, H. Komiya, and Y. Benno Parabacteroides gordonii sp. nov., isolated from human blood cultures Int J Syst Evol Microbiol, November 1, 2009; 59(11): 2843 - 2847. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 L. Chen, J. R. Mediavilla, D. C. Oliveira, B. M. Willey, H. de Lencastre, and B. N. Kreiswirth Multiplex Real-Time PCR for Rapid Staphylococcal Cassette Chromosome mec Typing J. Clin. Microbiol., November 1, 2009; 47(11): 3692 - 3706. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 C. S. Mahon, A. J. O'Donoghue, D. H. Goetz, P. G. Murray, C. S. Craik, and M. G. Tuohy Characterization of a multimeric, eukaryotic prolyl aminopeptidase: an inducible and highly specific intracellular peptidase from the non-pathogenic fungus Talaromyces emersonii Microbiology, November 1, 2009; 155(11): 3673 - 3682. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
K. Schirner and J. Errington Influence of heterologous MreB proteins on cell morphology of Bacillus subtilis Microbiology, November 1, 2009; 155(11): 3611 - 3621. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
Y. Sun, F. Xue, Y. Guo, M. Ma, N. Hao, X. C. Zhang, Z. Lou, X. Li, and Z. Rao Crystal Structure of Porcine Reproductive and Respiratory Syndrome Virus Leader Protease Nsp1{alpha} J. Virol., November 1, 2009; 83(21): 10931 - 10940. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 C. L. Elderkin Intragenomic variation in the rDNA internal transcribed spacer (ITS1) in the freshwater mussel Cumberlandia monodonta (Say, 1828) J. Mollus. Stud., November 1, 2009; 75(4): 419 - 421. [Full Text] [PDF]
|
|
|
|
 |
|
 S. K. A. Natesan, J. A. Sullivan, and J. C. Gray Myosin XI Is Required for Actin-Associated Movement of Plastid Stromules Mol Plant, November 1, 2009; 2(6): 1262 - 1272. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 K. Livingstone and S. Anderson Patterns of Variation in the Evolution of Carotenoid Biosynthetic Pathway Enzymes of Higher Plants J. Hered., November 1, 2009; 100(6): 754 - 761. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
K. Bouwmeester and F. Govers Arabidopsis L-type lectin receptor kinases: phylogeny, classification, and expression profiles J. Exp. Bot., November 1, 2009; 60(15): 4383 - 4396. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 G. Bannenberg, M. Martinez, M. J. Rodriguez, M. A. Lopez, I. Ponce de Leon, M. Hamberg, and C. Castresana Functional Analysis of {alpha}-DOX2, an Active {alpha}-Dioxygenase Critical for Normal Development in Tomato Plants Plant Physiology, November 1, 2009; 151(3): 1421 - 1432. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
Y. Nishiyama, S. Planque, Y. Mitsuda, G. Nitti, H. Taguchi, L. Jin, J. Symersky, S. Boivin, M. Sienczyk, M. Salas, et al. Toward Effective HIV Vaccination: INDUCTION OF BINARY EPITOPE REACTIVE ANTIBODIES WITH BROAD HIV NEUTRALIZING ACTIVITY J. Biol. Chem., October 30, 2009; 284(44): 30627 - 30642. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
E. Rajendra and A. R. Venkitaraman Two modules in the BRC repeats of BRCA2 mediate structural and functional interactions with the RAD51 recombinase Nucleic Acids Res., October 29, 2009; (2009) gkp873v1. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
L. A. Martin-Visscher, X. Gong, M. Duszyk, and J. C. Vederas The Three-dimensional Structure of Carnocyclin A Reveals That Many Circular Bacteriocins Share a Common Structural Motif J. Biol. Chem., October 16, 2009; 284(42): 28674 - 28681. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 J. Onofre-Lemus, I. Hernandez-Lucas, L. Girard, and J. Caballero-Mellado ACC (1-Aminocyclopropane-1-Carboxylate) Deaminase Activity, a Widespread Trait in Burkholderia Species, and Its Growth-Promoting Effect on Tomato Plants Appl. Envir. Microbiol., October 15, 2009; 75(20): 6581 - 6590. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. T. La Duc, S. Osman, P. Vaishampayan, Y. Piceno, G. Andersen, J. A. Spry, and K. Venkateswaran Comprehensive Census of Bacteria in Clean Rooms by Using DNA Microarray and Cloning Methods Appl. Envir. Microbiol., October 15, 2009; 75(20): 6559 - 6567. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
W. Li, L. R. DeBella, T. Guven-Ozkan, R. Lin, and L. S. Rose An eIF4E-binding protein regulates katanin protein levels in C. elegans embryos J. Cell Biol., October 5, 2009; 187(1): 33 - 42. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 A. J. Ramsay, V. Quesada, M. Sanchez, C. Garabaya, M. P. Sarda, M. Baiget, A. Remacha, G. Velasco, and C. Lopez-Otin Matriptase-2 mutations in iron-refractory iron deficiency anemia patients provide new insights into protease activation mechanisms Hum. Mol. Genet., October 1, 2009; 18(19): 3673 - 3683. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
E. P. Ivanova, R. Christen, C. Bizet, D. Clermont, L. Motreff, C. Bouchier, N. V. Zhukova, R. J. Crawford, and E. A. Kiprianova Pseudomonas brassicacearum subsp. neoaurantiaca subsp. nov., orange-pigmented bacteria isolated from soil and the rhizosphere of agricultural plants Int J Syst Evol Microbiol, October 1, 2009; 59(10): 2476 - 2481. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
T. R. Blower, P. C. Fineran, M. J. Johnson, I. K. Toth, D. P. Humphreys, and G. P. C. Salmond Mutagenesis and Functional Characterization of the RNA and Protein Components of the toxIN Abortive Infection and Toxin-Antitoxin Locus of Erwinia J. Bacteriol., October 1, 2009; 191(19): 6029 - 6039. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 R. M. Goldstone, S. D. Goonesekera, B. R. Bloom, and S. L. Sampson The Transcriptional Regulator Rv0485 Modulates the Expression of a pe and ppe Gene Pair and Is Required for Mycobacterium tuberculosis Virulence Infect. Immun., October 1, 2009; 77(10): 4654 - 4667. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
R. N. Slightom and A. Buchan Surface Colonization by Marine Roseobacters: Integrating Genotype and Phenotype Appl. Envir. Microbiol., October 1, 2009; 75(19): 6027 - 6037. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 T. Kriangkripipat and M. Momany Aspergillus nidulans Protein O-Mannosyltransferases Play Roles in Cell Wall Integrity and Developmental Patterning Eukaryot. Cell, October 1, 2009; 8(10): 1475 - 1485. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 L. N. Frazer, S. C. Lovell, and R. T. O'Keefe Analysis of Synthetic Lethality Reveals Genetic Interactions Between the GTPase Snu114p and snRNAs in the Catalytic Core of the Saccharomyces cerevisiae Spliceosome Genetics, October 1, 2009; 183(2): 497 - 515. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 C. Park, H.-H. Shin, E.-Y. Kwon, S.-M. Choi, S.-H. Kim, S. H. Park, J.-H. Choi, J.-H. Yoo, D.-G. Lee, and W. S. Shin Two variants of staphylococcal cassette chromosome mec type IVA in community-associated meticillin-resistant Staphylococcus aureus strains in South Korea J. Med. Microbiol., October 1, 2009; 58(10): 1314 - 1321. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
S. Conte, D. Stevenson, I. Furner, and A. Lloyd Multiple Antibiotic Resistance in Arabidopsis Is Conferred by Mutations in a Chloroplast-Localized Transport Protein Plant Physiology, October 1, 2009; 151(2): 559 - 573. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
G. W. Wilson and D. R. Edgell Phage T4 mobE promotes trans homing of the defunct homing endonuclease I-TevIII Nucleic Acids Res., September 30, 2009; (2009) gkp769v2. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
R. M. Smith, J. Josephsen, and M. D. Szczelkun An Mrr-family nuclease motif in the single polypeptide restriction-modification enzyme LlaGI Nucleic Acids Res., September 30, 2009; (2009) gkp795v1. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
E. T. Larson, F. Parussini, M.-H. Huynh, J. D. Giebel, A. M. Kelley, L. Zhang, M. Bogyo, E. A. Merritt, and V. B. Carruthers Toxoplasma gondii Cathepsin L Is the Primary Target of the Invasion-inhibitory Compound Morpholinurea-leucyl-homophenyl-vinyl Sulfone Phenyl J. Biol. Chem., September 25, 2009; 284(39): 26839 - 26850. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. Novo, F. Bigey, E. Beyne, V. Galeote, F. Gavory, S. Mallet, B. Cambon, J.-L. Legras, P. Wincker, S. Casaregola, et al. Eukaryote-to-eukaryote gene transfer events revealed by the genome sequence of the wine yeast Saccharomyces cerevisiae EC1118 PNAS, September 22, 2009; 106(38): 16333 - 16338. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
K. L. Hailey, S. Li, M. D. Andersen, M. Roy, V. L. Woods Jr, and P. A. Jennings Pro-interleukin (IL)-1{beta} Shares a Core Region of Stability as Compared with Mature IL-1{beta} While Maintaining a Distinctly Different Configurational Landscape: A COMPARATIVE HYDROGEN/DEUTERIUM EXCHANGE MASS SPECTROMETRY STUDY J. Biol. Chem., September 18, 2009; 284(38): 26137 - 26148. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. Rho and H. Tang MGEScan-non-LTR: computational identification and classification of autonomous non-LTR retrotransposons in eukaryotic genomes Nucleic Acids Res., September 17, 2009; (2009) gkp752v1. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 S. Pondugula, D. W. Neef, W. P. Voth, R. P. Darst, A. Dhasarathy, M. M. Reynolds, S. Takahata, D. J. Stillman, and M. P. Kladde Coupling Phosphate Homeostasis to Cell Cycle-Specific Transcription: Mitotic Activation of Saccharomyces cerevisiae PHO5 by Mcm1 and Forkhead Proteins Mol. Cell. Biol., September 15, 2009; 29(18): 4891 - 4905. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
C. Linke, T. T. Caradoc-Davies, P. G. Young, T. Proft, and E. N. Baker The Laminin-Binding Protein Lbp from Streptococcus pyogenes Is a Zinc Receptor J. Bacteriol., September 15, 2009; 191(18): 5814 - 5823. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 D. Wu, Y. Li, G. Song, C. Cheng, R. Zhang, A. Joachimiak, N. Shaw, and Z.-J. Liu Structural Basis for the Inhibition of Human 5,10-Methenyltetrahydrofolate Synthetase by N10-Substituted Folate Analogues Cancer Res., September 15, 2009; 69(18): 7294 - 7301. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. Avila-Perez, J. Vreede, Y. Tang, O. Bende, A. Losi, W. Gartner, and K. Hellingwerf In Vivo Mutational Analysis of YtvA from Bacillus subtilis: MECHANISM OF LIGHT ACTIVATION OF THE GENERAL STRESS RESPONSE J. Biol. Chem., September 11, 2009; 284(37): 24958 - 24964. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J. Chun, C. J. Grim, N. A. Hasan, J. H. Lee, S. Y. Choi, B. J. Haley, E. Taviani, Y.-S. Jeon, D. W. Kim, J.-H. Lee, et al. Comparative genomics reveals mechanism for short-term and long-term clonal transitions in pandemic Vibrio cholerae PNAS, September 8, 2009; 106(36): 15442 - 15447. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 R. Vanacore, A.-J. L. Ham, M. Voehler, C. R. Sanders, T. P. Conrads, T. D. Veenstra, K. B. Sharpless, P. E. Dawson, and B. G. Hudson A Sulfilimine Bond Identified in Collagen IV Science, September 4, 2009; 325(5945): 1230 - 1234. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
S. A. Headley, A. M. Amude, A. F. Alfieri, A. P. F.R.L. Bracarense, A. A. Alfieri, and B. A. Summers Molecular detection of Canine distemper virus and the immunohistochemical characterization of the neurologic lesions in naturally occurring old dog encephalitis J Vet Diagn Invest, September 1, 2009; 21(5): 588 - 597. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
S. C. Leao, E. Tortoli, C. Viana-Niero, S. Y. M. Ueki, K. V. B. Lima, M. L. Lopes, J. Yubero, M. C. Menendez, and M. J. Garcia Characterization of Mycobacteria from a Major Brazilian Outbreak Suggests that Revision of the Taxonomic Status of Members of the Mycobacterium chelonae-M. abscessus Group Is Needed J. Clin. Microbiol., September 1, 2009; 47(9): 2691 - 2698. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
N. O. G. Jorgensen, K. K. Brandt, O. Nybroe, and M. Hansen Delftia lacustris sp. nov., a peptidoglycan-degrading bacterium from fresh water, and emended description of Delftia tsuruhatensis as a peptidoglycan-degrading bacterium Int J Syst Evol Microbiol, September 1, 2009; 59(9): 2195 - 2199. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 S. T. Gregory, H. Demirci, R. Belardinelli, T. Monshupanee, C. Gualerzi, A. E. Dahlberg, and G. Jogl Structural and functional studies of the Thermus thermophilus 16S rRNA methyltransferase RsmG RNA, September 1, 2009; 15(9): 1693 - 1704. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
T. Phan, R. K. F. Beran, C. Peters, I. C. Lorenz, and B. D. Lindenbach Hepatitis C Virus NS2 Protein Contributes to Virus Particle Assembly via Opposing Epistatic Interactions with the E1-E2 Glycoprotein and NS3-NS4A Enzyme Complexes J. Virol., September 1, 2009; 83(17): 8379 - 8395. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
P. T. Beernink and D. M. Granoff The modular architecture of meningococcal factor H-binding protein Microbiology, September 1, 2009; 155(9): 2873 - 2883. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
P. Salah, M. Bisaglia, P. Aliprandi, M. Uzan, C. Sizun, and F. Bontems Probing the relationship between Gram-negative and Gram-positive S1 proteins by sequence analysis Nucleic Acids Res., September 1, 2009; 37(16): 5578 - 5588. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
F. M. Dwivany, D. Yulia, R. A. Burton, N. J. Shirley, S. M. Wilson, G. B. Fincher, A. Bacic, E. Newbigin, and M. S. Doblin The CELLULOSE-SYNTHASE LIKE C (CSLC) Family of Barley Includes Members that Are Integral Membrane Proteins Targeted to the Plasma Membrane Mol Plant, September 1, 2009; 2(5): 1025 - 1039. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
F. Bollig, B. Perner, B. Besenbeck, S. Kothe, C. Ebert, S. Taudien, and C. Englert A highly conserved retinoic acid responsive element controls wt1a expression in the zebrafish pronephros Development, September 1, 2009; 136(17): 2883 - 2892. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
N. Conde e Silva, I. R. Goncalves, M. Lemaire, E. Lesuisse, J. M. Camadro, and P. L. Blaiseau KlAft, the Kluyveromyces lactis Ortholog of Aft1 and Aft2, Mediates Activation of Iron-Responsive Transcription Through the PuCACCC Aft-Type Sequence Genetics, September 1, 2009; 183(1): 93 - 106. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 R. Suzuki, T. Katayama, M. Kitaoka, H. Kumagai, T. Wakagi, H. Shoun, H. Ashida, K. Yamamoto, and S. Fushinobu Crystallographic and Mutational Analyses of Substrate Recognition of Endo-{alpha}-N-acetylgalactosaminidase from Bifidobacterium longum J. Biochem., September 1, 2009; 146(3): 389 - 398. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
S. Teotia and R. S. Lamb The Paralogous Genes RADICAL-INDUCED CELL DEATH1 and SIMILAR TO RCD ONE1 Have Partially Redundant Functions during Arabidopsis Development Plant Physiology, September 1, 2009; 151(1): 180 - 198. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
T. J. Moriarty and G. Chaconas Identification of the Determinant Conferring Permissive Substrate Usage in the Telomere Resolvase, ResT J. Biol. Chem., August 28, 2009; 284(35): 23293 - 23301. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. S. Schonauer, A. J. Kastaniotis, V. A. S. Kursu, J. K. Hiltunen, and C. L. Dieckmann Lipoic Acid Synthesis and Attachment in Yeast Mitochondria J. Biol. Chem., August 28, 2009; 284(35): 23234 - 23242. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
D. Albinsky, M. Kusano, M. Higuchi, N. Hayashi, M. Kobayashi, A. Fukushima, M. Mori, T. Ichikawa, K. Matsui, H. Kuroda, et al. Metabolomic Screening Applied to Rice FOX Arabidopsis Lines Leads to the Identification of a Gene-Changing Nitrogen Metabolism Mol Plant, August 26, 2009; (2009) ssp069v1. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
L. Malki, M. Yanku, I. Borovok, G. Cohen, M. Mevarech, and Y. Aharonowitz Identification and Characterization of gshA, a Gene Encoding the Glutamate-Cysteine Ligase in the Halophilic Archaeon Haloferax volcanii J. Bacteriol., August 15, 2009; 191(16): 5196 - 5204. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J. Gury, H. Seraut, N. P. Tran, L. Barthelmebs, S. Weidmann, P. Gervais, and J.-F. Cavin Inactivation of PadR, the Repressor of the Phenolic Acid Stress Response, by Molecular Interaction with Usp1, a Universal Stress Protein from Lactobacillus plantarum, in Escherichia coli Appl. Envir. Microbiol., August 15, 2009; 75(16): 5273 - 5283. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J. L. Burns and T. J. DiChristina Anaerobic Respiration of Elemental Sulfur and Thiosulfate by Shewanella oneidensis MR-1 Requires psrA, a Homolog of the phsA Gene of Salmonella enterica Serovar Typhimurium LT2 Appl. Envir. Microbiol., August 15, 2009; 75(16): 5209 - 5217. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
Z. Zhang, X. Zhu, L. M. Stevens, and D. Stein Distinct functional specificities are associated with protein isoforms encoded by the Drosophila dorsal-ventral patterning gene pipe Development, August 15, 2009; 136(16): 2779 - 2789. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
C. P. Walsh, A. Davies, A. J. Butcher, A. C. Dolphin, and A. Kitmitto Three-dimensional Structure of CaV3.1: COMPARISON WITH THE CARDIAC L-TYPE VOLTAGE-GATED CALCIUM CHANNEL MONOMER ARCHITECTURE J. Biol. Chem., August 14, 2009; 284(33): 22310 - 22321. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
A. Reymer, K. Frykholm, K. Morimatsu, M. Takahashi, and B. Norden From the Cover: Structure of human Rad51 protein filament from molecular modeling and site-specific linear dichroism spectroscopy PNAS, August 11, 2009; 106(32): 13248 - 13253. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
Q. H. Christensen and J. E. Cronan The Thermoplasma acidophilum LplA-LplB Complex Defines a New Class of Bipartite Lipoate-protein Ligases J. Biol. Chem., August 7, 2009; 284(32): 21317 - 21326. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 S. K. Krueger, M. C. Henderson, L. K. Siddens, J. E. VanDyke, A. D. Benninghoff, P. A. Karplus, B. Furnes, D. Schlenk, and D. E. Williams Characterization of Sulfoxygenation and Structural Implications of Human Flavin-Containing Monooxygenase Isoform 2 (FMO2.1) Variants S195L and N413K Drug Metab. Dispos., August 1, 2009; 37(8): 1785 - 1791. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. J. Lace, C. Isacson, J. R. Anson, A. T. Lorincz, S. P. Wilczynski, T. H. Haugen, and L. P. Turek Upstream Regulatory Region Alterations Found in Human Papillomavirus Type 16 (HPV-16) Isolates from Cervical Carcinomas Increase Transcription, ori Function, and HPV Immortalization Capacity in Culture J. Virol., August 1, 2009; 83(15): 7457 - 7466. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
K. E. Varley, D. G. Mutch, T. B. Edmonston, P. J. Goodfellow, and R. D. Mitra Intra-tumor heterogeneity of MLH1 promoter methylation revealed by deep single molecule bisulfite sequencing Nucleic Acids Res., August 1, 2009; 37(14): 4603 - 4612. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
S. Spork, J. A. Hiss, K. Mandel, M. Sommer, T. W. A. Kooij, T. Chu, G. Schneider, U. G. Maier, and J. M. Przyborski An Unusual ERAD-Like Complex Is Targeted to the Apicoplast of Plasmodium falciparum Eukaryot. Cell, August 1, 2009; 8(8): 1134 - 1145. [Abstract] [Full Text] [PDF]
|
|