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Bioinformatics Advance Access originally published online on October 31, 2007
Bioinformatics 2007 23(23):3247-3248; doi:10.1093/bioinformatics/btm519
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© The Author 2007. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oxfordjournals.org

NPIDB: a Database of Nucleic Acids–Protein Interactions

Sergei Spirin 1,*, Mikhail Titov 2, Anna Karyagina 2,3 and Andrei Alexeevski 1

1A.N.Belozersky Institute of Physical and Chemical Biology of Moscow State University, Moscow, Russia, 2Institute of Agricultural Biotechnology and 3Gamaleya Institute of Epidemiology and Microbiology, Moscow, Russia

*To whom correspondence should be addressed.


  Abstract

Summary: The database NPIDB (Nucleic Acids—Protein Interaction DataBase) contains information derived from structures of DNA–protein and RNA–protein complexes extracted from PDB (1834 complexes in July 2007). It is organized as a collection of files in PDB format and is equipped with a web-interface and a set of tools for extracting biologically meaningful characteristics of complexes. The content of the database is weekly updated.

Availability: http://monkey.belozersky.msu.ru/NPIDB/

Contact: sas{at}belozersky.msu.ru

Associate Editor: Alex Bateman

Received on June 2, 2006; revised on August 28, 2007; accepted on October 12, 2007

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