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Bioinformatics Advance Access originally published online on October 5, 2007
Bioinformatics 2007 23(24):3403-3405; doi:10.1093/bioinformatics/btm477
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© 2007 The Author(s)
This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

XtalPred: a web server for prediction of protein crystallizability

Lukasz Slabinski 1,2, Lukasz Jaroszewski 1, Leszek Rychlewski 2, Ian A. Wilson 1, Scott A. Lesley 1 and Adam Godzik 1,*

1Joint Center for Structural Genomics, La Jolla, CA 92037, USA and 2BioInfoBank Institute, ul. Limanowskiego 24 A, 60-744 Poznan, Poland

*To whom correspondence should be addressed.


  Abstract

Summary: XtalPred is a web server for prediction of protein crystallizability. The prediction is made by comparing several features of the protein with distributions of these features in TargetDB and combining the results into an overall probability of crystallization. XtalPred provides: (1) a detailed comparison of the protein's features to the corresponding distribution from TargetDB; (2) a summary of protein features and predictions that indicate problems that are likely to be encountered during protein crystallization; (3) prediction of ligands; and (4) (optional) lists of close homologs from complete microbial genomes that are more likely to crystallize.

Availability: The XtalPred web server is freely available for academic users on http://ffas.burnham.org/XtalPred

Contact: adam{at}burnham.org

Associate Editor: Thomas Lengauer

Received on July 17, 2007; revised on August 30, 2007; accepted on September 18, 2007

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