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Bioinformatics Advance Access originally published online on November 24, 2006
Bioinformatics 2007 23(4):513-514; doi:10.1093/bioinformatics/btl594
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© The Author 2006. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oxfordjournals.org

QSCOP—SCOP quantified by structural relationships

Stefan J. Suhrer , Markus Wiederstein and Manfred J. Sippl *

Center of Applied Molecular Engineering, Department of Bioinformatics, Division of Molecular Biology, University of Salzburg Hellbrunnerstraße 34, 5020 Salzburg, Austria

*To whom correspondence should be addressed.


  Abstract

Summary: The database SCOP (Structural Classification Of Proteins) has become a major resource in bioinformatics and protein science. A particular strength of SCOP is the flexibility of its rules enabling the preservation of the many details spotted by experts in the classification process. Here we endow classic SCOP Families with quantified structural information and comment on the structural diversity found in the SCOP hierarchy.

Availability: Quantified SCOP (QSCOP) is available as a public WEB service. http://services.came.sbg.ac.at

Contact: sippl{at}came.sbg.ac.at

Associate Editor: Anna Tramontano

Received on September 22, 2006; revised on November 17, 2006; accepted on November 20, 2006

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