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Bioinformatics Advance Access originally published online on January 31, 2007
Bioinformatics 2007 23(7):898-900; doi:10.1093/bioinformatics/btm027
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© The Author 2007. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oxfordjournals.org

COPYCAT : cophylogenetic analysis tool

Jan P. Meier-Kolthoff 1, Alexander F. Auch 1,*, Daniel H. Huson 1 and Markus Göker 2

1Center for Bioinformatics (ZBIT), Sand 14, Tübingen and 2Organismic Botany/Mycology, Auf der Morgenstelle 1, Tübingen, University of Tübingen, Germany

*To whom correspondence should be addressed.


  Abstract

Summary: We have developed the software COPYCAT which provides an easy and fast access to cophylogenetic analyses. It incorporates a wrapper for the program PARAFIT, which conducts a statistical test for the presence of congruence between host and parasite phylogenies. COPYCAT offers various features, such as the creation of customized host–parasite association data and the computation of phylogenetic host/parasite trees based on the NCBI taxonomy.

Availability: COPYCAT and its manual are freely available at http://www-ab.informatik.uni-tuebingen.de/software/copycat.

Contact: auch{at}informatik.uni-tuebingen.de

Supplementary information: Results of the real-world example can be found at http://www-ab.informatik.uni-tuebingen.de/software/copycat or Bioinformatics online.

Associate Editor: Keith Crandall

Received on November 28, 2006; revised on January 19, 2007; accepted on January 23, 2007

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