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Bioinformatics Advance Access originally published online on January 19, 2007
Bioinformatics 2007 23(9):1161-1163; doi:10.1093/bioinformatics/btl658
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© 2007 The Author(s)
This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

FIVA: Functional Information Viewer and Analyzer extracting biological knowledge from transcriptome data of prokaryotes

Evert-Jan Blom 1, Dinne W. J. Bosman 2, Sacha A. F. T. van Hijum 1, Rainer Breitling 3, Lars Tijsma 2, Remko Silvis 1, Jos B. T. M. Roerdink 2 and Oscar P. Kuipers 1,*

1Molecular Genetics, Groningen Biomolecular Sciences, 2Institute for Mathematics and Computing Science and 3Groningen Bioinformatics Centre, University of Groningen, PO Box 800, 9700 AV, Groningen, The Netherlands

*To whom correspondence should be addressed.


  Abstract

Summary: FIVA (Function Information Viewer and Analyzer) aids researchers in the prokaryotic community to quickly identify relevant biological processes following transcriptome analysis. Our software assists in functional profiling of large sets of genes and generates a comprehensive overview of affected biological processes.

Availability: http://bioinformatics.biol.rug.nl/standalone/fiva/

Contact: o.p.kuipers{at}rug.nl

Supplementary information: http://bioinformatics.biol.rug.nl/standalone/fiva/suppMaterials.php

Associate Editor: Dmitrij Frishman

Received on October 19, 2006; revised on November 24, 2006; accepted on December 19, 2006

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