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Bioinformatics Advance Access originally published online on April 1, 2008
Bioinformatics 2008 24(10):1313-1315; doi:10.1093/bioinformatics/btn115
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© The Author 2008. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oxfordjournals.org

FT-COMAR: fault tolerant three-dimensional structure reconstruction from protein contact maps

Marco Vassura 1,*, Luciano Margara 1, Pietro Di Lena 1, Filippo Medri 1, Piero Fariselli 2 and Rita Casadio 2

1Department of Computer Science and 2Department of Biology, Biocomputing group, University of Bologna, Bologna, Italy

*To whom correspondence should be addressed.


  Abstract

Summary: Fault Tolerant Contact Map Reconstruction (FT-COMAR) is a heuristic algorithm for the reconstruction of the protein three-dimensional structure from (possibly) incomplete (i.e. containing unknown entries) and noisy contact maps. FT-COMAR runs within minutes, allowing its application to a large-scale number of predictions.

Availability: http://bioinformatics.cs.unibo.it/FT-COMAR

Contact: vassura{at}cs.unibo.it

Supplementary information: Supplementary data are available on Bioinformatics online.

Associate Editor: Alfonso Valencia

Received on January 3, 2008; revised on March 17, 2008; accepted on March 28, 2008

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