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Bioinformatics Advance Access originally published online on September 8, 2008
Bioinformatics 2008 24(21):2557-2558; doi:10.1093/bioinformatics/btn473
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© 2008 The Author(s)
This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

OmicsViz: Cytoscape plug-in for visualizing omics data across species

Tian Xia 1 and Julie A. Dickerson 1,2,*

1Program of Bioinformatics and Computational Biology, 2Department of Electrical and Computer Engineering, Iowa State University, Ames, IA 50010, USA

*To whom correspondence should be addressed.


  Abstract

Motivation: OmicsViz is a Cytoscape plug-in for mapping and visualizing large-scale omics datasets across species, including those with many-to-many mappings between homologs. This allows users to map their data onto pathways of related model organisms. Mapping schemas across species or different experimental protocols allow users to comparatively analyze the omics data. The data can also be visualized in parallel-coordinate plots.

Availability: The latest version of OmicsViz with documentation, tutorial and jar files can be downloaded from http://metnet.vrac.iastate.edu/MetNet_fcmodeler.htm

Contact: julied{at}iastate.edu

Associate Editor: Trey Ideker

Received on July 25, 2008; revised on July 25, 2008; accepted on September 2, 2008

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